Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HQN46_RS25455 Genome accession   NZ_CP087103
Coordinates   4921642..4922991 (-) Length   449 a.a.
NCBI ID   WP_215712327.1    Uniprot ID   -
Organism   Bacillus toyonensis strain HA0190     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4916642..4927991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS25435 (HQN46_0025435) secA 4916970..4919477 (-) 2508 WP_000579397.1 preprotein translocase subunit SecA -
  HQN46_RS25440 (HQN46_0025440) hpf 4919753..4920295 (-) 543 WP_000671188.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HQN46_RS25445 (HQN46_0025445) cspC 4920614..4920811 (-) 198 WP_002045823.1 cold shock protein CspC -
  HQN46_RS25450 (HQN46_0025450) - 4920938..4921642 (-) 705 WP_215712328.1 ComF family protein -
  HQN46_RS25455 (HQN46_0025455) comFA 4921642..4922991 (-) 1350 WP_215712327.1 ATP-dependent helicase ComFA Machinery gene
  HQN46_RS25460 (HQN46_0025460) - 4923118..4924515 (-) 1398 WP_215712326.1 coiled-coil domain-containing protein -
  HQN46_RS25465 (HQN46_0025465) - 4924676..4924990 (-) 315 WP_000400852.1 winged helix-turn-helix transcriptional regulator -
  HQN46_RS25470 (HQN46_0025470) - 4925162..4926004 (-) 843 WP_000844773.1 DegV family protein -
  HQN46_RS25475 (HQN46_0025475) - 4926243..4926878 (+) 636 WP_098717382.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50976.70 Da        Isoelectric Point: 9.3430

>NTDB_id=626629 HQN46_RS25455 WP_215712327.1 4921642..4922991(-) (comFA) [Bacillus toyonensis strain HA0190]
MLSGKQLLLEELSTDVRDNLDDLNKKGEVVCVQGVKNKASTYMCQRCGNIAQRLFSSFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIVEKKGEMDVNPLQWKGNLSTGQELAAQGVMEAVKQKESFFIWAVCGAGKTEMLFYGIAEALQKGERVCIAT
PRTDVVLELAPRLKEVFPNINVAALYGGSLDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHGDQMLQYAVKQAM
KEKAACIYLTATPDEEWKRNLRKGKQKGIVVSGRYHRHPLPVPKFCWCGNWKKSLINKRIPQVLLQWLKVYLNKKYPIFL
FVPHVRYIEEMSLLLKLLDDRVAGVHAEDPMRKEKVTAFRKGEIPLLVTTTILERGVTVKNLQVAVLGTEEEIFSESALV
QIAGWVGRSFEEPYGEVIYFHYGKTEAMVRAKKHIRSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=626629 HQN46_RS25455 WP_215712327.1 4921642..4922991(-) (comFA) [Bacillus toyonensis strain HA0190]
ATGTTATCTGGGAAACAGTTATTATTAGAAGAACTCTCTACAGACGTACGGGATAATTTAGATGATTTGAATAAGAAGGG
AGAGGTCGTATGTGTACAAGGTGTAAAAAATAAGGCTTCTACATATATGTGTCAGCGTTGCGGAAATATAGCACAAAGAC
TCTTTTCATCATTTTTGTGTAAAAGGTGTAGTAAAGTTTGCACATATTGCCGGAAGTGCATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGTGGAATTGTTGAAAAAAAGGGAGAAATGGATGTAAACCCGTTACAGTGGAAAGGAAATTT
ATCTACTGGCCAGGAGTTGGCTGCGCAAGGTGTTATGGAGGCTGTTAAACAGAAAGAATCGTTTTTTATTTGGGCTGTGT
GCGGCGCTGGAAAAACAGAAATGTTGTTTTATGGTATTGCAGAGGCACTTCAAAAAGGAGAAAGGGTTTGTATTGCAACG
CCGAGAACGGATGTTGTACTTGAATTAGCACCGAGATTGAAAGAAGTATTTCCGAATATAAATGTAGCTGCTTTATACGG
TGGGAGTTTAGATCGGGAAAAAGATGCAGCGTTAGTCGTTGCGACCACCCATCAGCTATTGCGTTATTATAGAGCGTTTC
ATGTCATGATTGTAGATGAAATAGATGCCTTTCCATACCATGGAGATCAAATGTTGCAGTATGCGGTAAAACAAGCGATG
AAAGAGAAAGCGGCATGTATTTATTTAACTGCAACTCCAGATGAAGAGTGGAAGCGTAACCTTAGAAAGGGGAAACAAAA
AGGTATCGTTGTTTCTGGACGGTATCACCGTCATCCGTTGCCAGTCCCCAAATTTTGTTGGTGCGGAAACTGGAAGAAAA
GCCTCATCAATAAAAGAATTCCTCAAGTTTTACTACAATGGTTAAAAGTATACTTAAATAAAAAGTACCCCATTTTTTTA
TTTGTTCCCCATGTGCGATATATAGAAGAAATGAGTCTGTTATTGAAGTTGTTAGACGATAGAGTTGCCGGTGTGCATGC
AGAAGATCCAATGAGAAAAGAGAAAGTTACAGCTTTCAGAAAGGGAGAAATTCCTTTATTAGTTACAACGACGATTTTGG
AGAGAGGAGTAACGGTGAAAAATTTGCAAGTTGCGGTTTTAGGGACGGAAGAAGAAATATTTTCAGAAAGCGCACTCGTA
CAAATTGCAGGCTGGGTAGGTCGTAGTTTTGAAGAGCCGTATGGAGAGGTCATTTATTTTCATTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACACATTCGAAGTATGAACAAAAATGCGAAAGAACAAGGGTTAATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(106-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.774

98.441

0.49
  comFA Latilactobacillus sakei subsp. sakei 23K

40.199

89.755

0.361