Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   HQN46_RS20785 Genome accession   NZ_CP087103
Coordinates   4058377..4059420 (-) Length   347 a.a.
NCBI ID   WP_001013173.1    Uniprot ID   -
Organism   Bacillus toyonensis strain HA0190     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4053377..4064420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS20750 (HQN46_0020750) - 4054273..4054626 (+) 354 WP_215712261.1 helix-turn-helix domain-containing protein -
  HQN46_RS20755 (HQN46_0020755) - 4054825..4055994 (+) 1170 WP_215712262.1 site-specific integrase -
  HQN46_RS20760 (HQN46_0020760) - 4056149..4056325 (-) 177 Protein_4050 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HQN46_RS20765 (HQN46_0020765) - 4056295..4056597 (-) 303 WP_000829527.1 hypothetical protein -
  HQN46_RS20770 (HQN46_0020770) comGD 4056590..4057045 (-) 456 WP_000810403.1 competence type IV pilus minor pilin ComGD -
  HQN46_RS20775 (HQN46_0020775) comGC 4057042..4057341 (-) 300 WP_001178691.1 competence type IV pilus major pilin ComGC -
  HQN46_RS20780 (HQN46_0020780) comGB 4057353..4058390 (-) 1038 WP_303393745.1 competence type IV pilus assembly protein ComGB -
  HQN46_RS20785 (HQN46_0020785) comGA 4058377..4059420 (-) 1044 WP_001013173.1 competence type IV pilus ATPase ComGA Machinery gene
  HQN46_RS20790 (HQN46_0020790) - 4059625..4060320 (+) 696 WP_000434115.1 helix-turn-helix transcriptional regulator -
  HQN46_RS20795 (HQN46_0020795) - 4060534..4060776 (+) 243 WP_000440717.1 DUF2626 domain-containing protein -
  HQN46_RS20800 (HQN46_0020800) - 4060884..4062278 (+) 1395 WP_001094349.1 L-cystine transporter -
  HQN46_RS20805 (HQN46_0020805) - 4062341..4062733 (-) 393 WP_000875407.1 hypothetical protein -
  HQN46_RS20810 (HQN46_0020810) - 4062821..4063036 (-) 216 WP_001008324.1 DUF3912 family protein -
  HQN46_RS20815 (HQN46_0020815) - 4063289..4063600 (+) 312 WP_001092833.1 hypothetical protein -
  HQN46_RS20820 (HQN46_0020820) - 4063636..4064124 (-) 489 WP_000764243.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39220.57 Da        Isoelectric Point: 8.5491

>NTDB_id=626618 HQN46_RS20785 WP_001013173.1 4058377..4059420(-) (comGA) [Bacillus toyonensis strain HA0190]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLITKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVYLRLSTLPTVYRESLVIRLHLQASVQPLSHLSLFPSTAEKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKRKTRRIVTLEDPVEKRKDDLLQIQINEKAGITYEAGLKAILRHDPDIILVGEIRDEETAKIAVRASLTGHLVMTTLH
TNDAKGAILRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSILCKSMRQVRQASVYELLDGYDLQQAIKEANGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=626618 HQN46_RS20785 WP_001013173.1 4058377..4059420(-) (comGA) [Bacillus toyonensis strain HA0190]
ATGAATGGAATTGAAATTTTTGCGAATACAATTTTGAAAGAAGCGTGTAGGGTACAAGCATCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTTCAGCTACGTATAGGAAAAGATTTAATTACGAAACAATGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCGCACTTTAAATTTTTGGCATCTATGGATATAGGAGAGAGGCGGAAGCCACAAAATGGTTCATTGTAT
TTACAAATTGATGGACAAGAAGTGTATTTACGTCTTTCAACACTTCCGACTGTATATCGAGAAAGTCTCGTGATTCGCCT
TCATTTACAAGCATCTGTGCAGCCTTTATCTCATCTTTCGTTATTTCCAAGTACGGCGGAAAAACTCCTCTCTTTTTTAC
GTTATTCACATGGTCTACTCGTATTTACTGGACCGACTGGTTCTGGGAAGACAACGACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAGGAAAACACGTCGAATTGTAACACTTGAAGACCCAGTTGAAAAAAGAAAAGACGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTACGCCATGATCCAGATATTATATTAGTTG
GCGAAATCCGAGATGAAGAAACAGCAAAAATAGCTGTAAGAGCAAGTTTAACTGGACATTTAGTAATGACGACCCTGCAT
ACGAATGATGCGAAAGGAGCGATACTCAGATTCATGGATTATGGCATAACGAGGCAAGAAATTGAACAATCTTTATTGGC
TGTAGCTGCACAGCGACTTGTTGAATTAAAGTGTCCATTTTGCAGAGGAAAGTGCTCAATTTTATGTAAATCAATGCGGC
AAGTAAGGCAAGCAAGCGTTTACGAGTTGTTAGATGGATATGATTTGCAACAAGCGATTAAAGAAGCGAACGGAGAATGT
GTTACGTACAAACATGAAACATTAGAATCTTCGATACGAAAAGGGTATGCTTTAGGATTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.637

100

0.576