Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HQN46_RS19215 Genome accession   NZ_CP087103
Coordinates   3798320..3798754 (-) Length   144 a.a.
NCBI ID   WP_000811505.1    Uniprot ID   -
Organism   Bacillus toyonensis strain HA0190     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3793320..3803754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS19200 (HQN46_0019200) - 3794488..3795045 (+) 558 WP_000062081.1 PadR family transcriptional regulator -
  HQN46_RS19205 (HQN46_0019205) metE 3795569..3797857 (+) 2289 WP_001007621.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  HQN46_RS19210 (HQN46_0019210) - 3797895..3798284 (-) 390 WP_000424019.1 competence protein ComJ -
  HQN46_RS19215 (HQN46_0019215) nucA/comI 3798320..3798754 (-) 435 WP_000811505.1 DNA-entry nuclease Machinery gene
  HQN46_RS19220 (HQN46_0019220) - 3798993..3799742 (+) 750 WP_000387496.1 DUF3967 domain-containing protein -
  HQN46_RS19225 (HQN46_0019225) - 3799781..3801055 (-) 1275 WP_000420365.1 sensor histidine kinase -
  HQN46_RS19230 (HQN46_0019230) - 3801367..3801567 (+) 201 WP_000929282.1 hypothetical protein -
  HQN46_RS19235 (HQN46_0019235) - 3801686..3802849 (+) 1164 WP_000434562.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15938.31 Da        Isoelectric Point: 8.9015

>NTDB_id=626614 HQN46_RS19215 WP_000811505.1 3798320..3798754(-) (nucA/comI) [Bacillus toyonensis strain HA0190]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKGRYPETGKHITDAIKEGHSEVCTIDRGGAGDRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=626614 HQN46_RS19215 WP_000811505.1 3798320..3798754(-) (nucA/comI) [Bacillus toyonensis strain HA0190]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTGTATGAAGTACTTGTTCC
AGAGGAAACAAGTATCAAAAAAACGAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGGGCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGACATTCAGAAGTTTGTACAATTGATCGTGGTGGTGCTGGAGATAGAAGGAAA
TTATCGTTAGCTCCATATCCATCAAAAAAAGGCTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGGGCGCATATTGAATATATAAGTCCAGCGGATAATCGCGGAGCAGGTTCTTGGGTAGGAAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(51-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.171

77.083

0.549