Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HQN46_RS11945 Genome accession   NZ_CP087103
Coordinates   2333012..2333290 (+) Length   92 a.a.
NCBI ID   WP_000842220.1    Uniprot ID   -
Organism   Bacillus toyonensis strain HA0190     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2328012..2338290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS11925 (HQN46_0011925) - 2328787..2329389 (+) 603 WP_000517273.1 hypothetical protein -
  HQN46_RS11930 (HQN46_0011930) - 2329890..2331071 (+) 1182 WP_139823532.1 agmatine/peptidylarginine deiminase -
  HQN46_RS11935 (HQN46_0011935) - 2331497..2331748 (-) 252 WP_000827557.1 response regulator transcription factor -
  HQN46_RS11940 (HQN46_0011940) - 2331996..2332871 (+) 876 WP_230075176.1 helix-turn-helix domain-containing protein -
  HQN46_RS11945 (HQN46_0011945) abrB 2333012..2333290 (+) 279 WP_000842220.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HQN46_RS11950 (HQN46_0011950) - 2333769..2335019 (+) 1251 WP_001032373.1 hypothetical protein -
  HQN46_RS11955 (HQN46_0011955) - 2335087..2335845 (+) 759 WP_002043431.1 TSUP family transporter -
  HQN46_RS11960 (HQN46_0011960) - 2336098..2336757 (+) 660 WP_000682550.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10310.09 Da        Isoelectric Point: 9.6266

>NTDB_id=626608 HQN46_RS11945 WP_000842220.1 2333012..2333290(+) (abrB) [Bacillus toyonensis strain HA0190]
MKSRGSTRKADSMGRIVIPMEIRRSLGIVEKDALEMFVEEDQIILRKYQSSQACAITGDISDKNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=626608 HQN46_RS11945 WP_000842220.1 2333012..2333290(+) (abrB) [Bacillus toyonensis strain HA0190]
ATGAAATCAAGAGGGAGTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATGCGCTAGAAATGTTTGTGGAAGAGGATCAGATTATTTTGCGGAAATATCAATCTTCACAAGCTT
GTGCAATTACAGGTGATATTTCAGATAAGAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGAACAGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

52.222

97.826

0.511