Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HQN46_RS06295 Genome accession   NZ_CP087103
Coordinates   1215406..1215729 (-) Length   107 a.a.
NCBI ID   WP_000578874.1    Uniprot ID   -
Organism   Bacillus toyonensis strain HA0190     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1210406..1220729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS06270 (HQN46_0006270) - 1210671..1211957 (+) 1287 WP_144466988.1 D-alanyl-D-alanine carboxypeptidase family protein -
  HQN46_RS06275 (HQN46_0006275) sipW 1212153..1212722 (+) 570 WP_000767788.1 signal peptidase I SipW -
  HQN46_RS06280 (HQN46_0006280) - 1212787..1213374 (+) 588 WP_000172853.1 CalY family protein -
  HQN46_RS06285 (HQN46_0006285) - 1213495..1214310 (+) 816 WP_226534245.1 DUF4047 domain-containing protein -
  HQN46_RS06290 (HQN46_0006290) calY 1214730..1215323 (+) 594 WP_000053723.1 biofilm matrix protein CalY -
  HQN46_RS06295 (HQN46_0006295) sinR 1215406..1215729 (-) 324 WP_000578874.1 helix-turn-helix domain-containing protein Regulator
  HQN46_RS06300 (HQN46_0006300) - 1215809..1215943 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  HQN46_RS06305 (HQN46_0006305) inhA1 1216289..1218676 (+) 2388 WP_001035955.1 M6 family metalloprotease immune inhibitor InhA1 -
  HQN46_RS06310 (HQN46_0006310) - 1218834..1220201 (+) 1368 WP_000028367.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12417.27 Da        Isoelectric Point: 9.6542

>NTDB_id=626603 HQN46_RS06295 WP_000578874.1 1215406..1215729(-) (sinR) [Bacillus toyonensis strain HA0190]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEARLDSEWTQLV
KDAMNSGVSKEQFREFLEFTQWKRNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=626603 HQN46_RS06295 WP_000578874.1 1215406..1215729(-) (sinR) [Bacillus toyonensis strain HA0190]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAGGAAGCTCGCCTAGACTCCGAATGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAGTGGAAGCGAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692