Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   N2A93_RS03910 Genome accession   NZ_CP104046
Coordinates   735189..738827 (+) Length   1212 a.a.
NCBI ID   WP_003106528.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 730189..743827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS03900 (N2A93_03900) - 730804..731748 (-) 945 WP_003106525.1 neutral zinc metallopeptidase -
  N2A93_RS03905 (N2A93_03905) rexB 731936..735199 (+) 3264 WP_037621924.1 ATP-dependent nuclease subunit B Machinery gene
  N2A93_RS03910 (N2A93_03910) rexA 735189..738827 (+) 3639 WP_003106528.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  N2A93_RS03915 (N2A93_03915) - 738938..740068 (+) 1131 WP_003106529.1 aminotransferase -
  N2A93_RS03920 (N2A93_03920) - 740083..740895 (+) 813 WP_003106530.1 transporter substrate-binding domain-containing protein -
  N2A93_RS03925 (N2A93_03925) rpsU 741023..741199 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  N2A93_RS03930 (N2A93_03930) mscL 741308..741688 (-) 381 WP_003104850.1 large conductance mechanosensitive channel protein MscL -
  N2A93_RS03935 (N2A93_03935) dnaG 741815..743626 (+) 1812 WP_003106531.1 DNA primase -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 139639.34 Da        Isoelectric Point: 5.6951

>NTDB_id=626515 N2A93_RS03910 WP_003106528.1 735189..738827(+) (rexA) [Streptococcus parauberis strain KSP14]
MNFKPFLTADQIKALQLHEASSNKKQKRTPEQIEAIYTSGQNVLVSASAGSGKTFVMVERIIDKLLRGVAIEEMFISTFT
VKAATELKERLEKKLVEAIKASDDYEMKSFLNYQLQSIHIADIGTMDSFTQKLISEYGYTLGIAPKYRIMQDKSEQDVIK
DIIYKDLFEIYMASDETGDFLRLVKNFSGNRKDSNGFKEIVNKVYTFSQSTENPLLWLDEVFLKGAQDYQGYADLTDYII
TDFLKIMSETAKQLRDLTEMEGYPKEKKDGKPTAKYTGHLKIIDYLEQNANEFNYIEDKDKISHLANEVSNLLPAGDSIT
VNKIAYQVYKQINASLRNLRHLDTIIQYQAESIPLLILLKNFVVDFSNAYLDRKKIENAFEFSDIAHFAIALLETYPEIR
QLYQDKYHEVMVDEYQDNNHMQERLLDLLSSGHNRFMVGDIKQSIYRFRQADPQIFNSKFKAYQEDPNQGKLILLKENFR
SQSEVLDVTNAIFTHLMDEEIGDILYDDNHRLIPGSAKQREQKTSNQAQVWIYDTDETSNPEPDSESDNDNLSPGQVKIV
AKEIIRLHQEEAVPFSEITLLVSSRTRNDSIFQTFNQYGIPLVADGGQENYLKSVEVMVMLETLRSINNPYNDYALVALM
RSPMFNFDEDQLARIALQTSQTQKLDSYYEKLKLAKSGQGQQRQLITTELAEKIGKFLSYLSQWRTYSQKQSLYSLIWKI
YNDRFYFDFVGTLPKAEQAQANLYALALRAQQFEKTGFKGLTRFIGMIDKILNSQNDLADVDVAKPKDAVSIMTIHKSKG
LEFQYVFILNCDKKFALKDIHSPMILSRHRGAGIKFLADLKDKLQANQLASLKVYLETIPYQMNRQELIFATLSEQMRLF
YVAMTRAEKKLYLIGKGSQKKLVDKFDGQKEGNHLPKALRESMKSFQEWILAIQAAFPLKDLHFNLAYIDDSQLTDQEIG
HLENKHSLDPDNLQNNRQTDEIARAIDMLDKVQELNQTYHAAITLPTVRTPSQIKKFYEPIMPSEGIDIISKTPFLPAEI
VLPDFSKEKTVLASDIGSAMHELMQRIPISDSLSLDDVEEAKRLIDASEEVKAALNLNMVFDFFEHTELGQMLQRNKERL
YREAPFAMLKVDNASHEKFVVRGIIDGFLRFDDRIILFDYKTDKYKNPLDIGHRYQDQMELYAEALQQAYGIHKIEKHLV
LLGGKKVEIITL

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=626515 N2A93_RS03910 WP_003106528.1 735189..738827(+) (rexA) [Streptococcus parauberis strain KSP14]
ATGAACTTTAAGCCATTTTTAACTGCTGATCAAATCAAAGCTTTGCAATTACATGAAGCAAGTTCTAATAAAAAGCAAAA
ACGGACACCTGAGCAAATTGAAGCCATTTATACAAGTGGACAAAATGTTCTTGTATCAGCTTCAGCTGGTTCAGGTAAAA
CCTTTGTTATGGTTGAACGAATCATAGATAAGCTTCTCCGTGGAGTTGCAATCGAGGAAATGTTTATCTCTACATTTACT
GTTAAAGCAGCTACGGAATTAAAAGAACGTCTTGAAAAGAAATTAGTTGAGGCAATTAAAGCTAGTGATGATTATGAGAT
GAAATCTTTTCTCAATTACCAACTCCAGTCTATACACATAGCTGACATAGGAACAATGGATTCCTTCACCCAAAAGTTGA
TTTCAGAATATGGTTATACCTTAGGAATTGCGCCCAAATATCGCATTATGCAAGACAAGTCTGAGCAAGATGTTATAAAA
GATATTATTTATAAGGACCTATTTGAAATTTACATGGCATCAGATGAGACTGGTGACTTCCTCAGACTAGTCAAAAACTT
TTCTGGAAATCGCAAGGATTCAAATGGTTTTAAGGAAATTGTCAATAAGGTCTACACCTTCAGTCAATCAACGGAAAATC
CCTTATTATGGCTAGATGAGGTTTTCTTAAAAGGAGCACAAGACTACCAAGGCTATGCTGATTTAACGGATTATATTATC
ACTGATTTCCTCAAAATCATGTCTGAAACAGCAAAGCAATTACGTGATTTAACTGAGATGGAAGGTTATCCAAAAGAGAA
AAAAGATGGTAAACCAACGGCTAAGTATACAGGACACTTAAAAATAATTGATTACTTAGAGCAGAACGCTAATGAGTTTA
ATTATATTGAAGATAAAGATAAGATAAGTCATTTAGCTAACGAAGTTTCAAACTTATTACCAGCAGGAGATTCTATTACA
GTTAACAAAATCGCCTATCAAGTCTATAAGCAAATTAATGCTAGCTTAAGAAACTTACGTCATCTTGATACCATTATTCA
GTATCAAGCAGAAAGTATCCCACTTTTAATCCTTCTGAAAAATTTTGTTGTTGATTTTTCAAATGCTTATCTGGATCGCA
AAAAAATTGAGAATGCTTTTGAATTTTCAGACATTGCTCATTTTGCAATTGCTCTTCTAGAAACATACCCAGAGATTAGA
CAGCTGTATCAAGATAAGTACCATGAAGTAATGGTTGATGAGTATCAGGATAACAATCACATGCAAGAACGACTACTTGA
CTTATTATCAAGTGGGCATAATCGTTTTATGGTAGGTGATATAAAACAATCGATTTATCGCTTCCGTCAAGCTGACCCAC
AAATCTTTAATAGTAAATTTAAAGCGTATCAGGAAGATCCAAATCAAGGGAAATTAATCCTACTAAAAGAAAATTTCCGG
AGTCAATCGGAAGTTCTTGATGTAACAAATGCTATATTTACTCATTTGATGGATGAAGAAATTGGTGATATCCTTTATGA
TGACAATCATCGTCTCATCCCAGGAAGTGCAAAACAAAGAGAACAGAAAACAAGTAATCAAGCTCAAGTCTGGATTTATG
ACACAGATGAGACAAGTAATCCTGAACCTGATTCAGAAAGTGACAATGACAACCTTAGCCCAGGTCAAGTCAAGATTGTA
GCAAAAGAAATAATCCGTCTTCATCAAGAAGAAGCTGTACCCTTTTCAGAAATTACCTTATTGGTCTCATCCAGAACGCG
TAATGACAGTATTTTTCAAACCTTTAATCAGTACGGCATACCACTAGTGGCAGATGGCGGTCAAGAAAACTATCTGAAGT
CAGTAGAAGTCATGGTTATGCTAGAAACCCTTCGATCCATCAACAATCCTTATAATGACTATGCTTTGGTTGCCTTAATG
CGATCGCCAATGTTTAACTTTGACGAAGATCAATTGGCAAGAATTGCTTTGCAGACAAGCCAAACTCAAAAGTTAGATAG
TTATTATGAAAAATTAAAACTAGCAAAAAGTGGACAGGGTCAGCAGCGACAATTAATTACTACTGAATTAGCCGAAAAAA
TTGGCAAATTTCTAAGTTATCTTAGTCAATGGCGAACCTATTCTCAGAAGCAATCATTGTATTCCCTAATTTGGAAAATT
TATAATGATCGATTCTATTTTGATTTTGTTGGAACATTACCGAAAGCTGAACAGGCTCAGGCCAACTTGTACGCACTTGC
CTTACGGGCACAGCAATTCGAGAAGACAGGGTTTAAAGGTTTAACACGGTTTATCGGAATGATTGATAAAATTCTAAATA
GTCAAAATGACTTGGCTGATGTTGATGTTGCGAAACCAAAAGATGCGGTTAGTATCATGACTATTCATAAATCGAAAGGC
TTAGAGTTTCAGTATGTCTTTATCTTAAACTGTGATAAAAAATTTGCCTTGAAAGATATCCACTCACCGATGATTTTAAG
CCGCCACCGTGGGGCTGGAATTAAATTTTTAGCTGATTTAAAAGACAAATTACAAGCTAATCAACTGGCTAGTCTAAAAG
TTTATCTGGAAACAATTCCTTACCAAATGAATCGTCAGGAGTTAATCTTTGCTACCCTATCAGAACAAATGCGACTCTTC
TATGTGGCGATGACCAGAGCAGAGAAAAAATTGTATTTGATTGGTAAAGGAAGTCAAAAGAAATTAGTAGATAAATTTGA
TGGTCAAAAAGAAGGAAACCACTTACCGAAAGCTTTAAGAGAAAGTATGAAAAGCTTTCAAGAATGGATTCTCGCTATCC
AGGCTGCCTTTCCACTAAAAGACTTGCATTTTAATCTAGCATATATTGATGATAGTCAACTTACTGATCAAGAAATTGGC
CATTTAGAAAACAAACATAGTTTAGATCCTGATAATCTCCAAAATAACCGGCAGACTGATGAGATTGCGCGTGCCATTGA
TATGTTGGATAAAGTCCAAGAGCTAAATCAAACATACCACGCGGCGATTACTTTACCAACAGTTCGTACCCCAAGTCAAA
TTAAGAAGTTTTATGAACCAATTATGCCTTCTGAAGGGATTGACATTATCAGTAAAACACCATTTTTACCGGCTGAAATT
GTCTTGCCTGATTTTTCAAAAGAAAAAACAGTATTGGCTAGTGATATTGGTTCAGCAATGCATGAACTAATGCAGCGAAT
TCCCATCTCTGATTCTCTTAGCTTAGATGATGTTGAAGAAGCTAAAAGGTTAATTGATGCAAGTGAGGAAGTTAAAGCAG
CATTAAACCTCAATATGGTGTTTGATTTCTTTGAACATACTGAATTAGGTCAAATGCTTCAAAGAAATAAAGAACGTTTA
TATCGTGAAGCACCATTTGCCATGCTCAAAGTGGATAATGCCAGCCACGAAAAATTTGTTGTTCGTGGGATCATTGATGG
TTTCTTACGTTTTGATGATAGAATTATCCTTTTTGATTATAAAACTGACAAGTACAAGAATCCTCTTGACATTGGCCATC
GTTACCAAGACCAAATGGAACTATATGCAGAAGCTCTCCAACAAGCCTATGGCATTCATAAGATTGAAAAACATTTAGTC
CTACTTGGTGGAAAAAAAGTTGAAATAATAACCTTATAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1050-1189)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-463)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-894)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

48.377

100

0.492