Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BAPNAU_RS06460 Genome accession   NC_022530
Coordinates   1296711..1297478 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis NAU-B3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1291711..1302478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAPNAU_RS06435 (BAPNAU_1219) - 1291994..1294126 (+) 2133 WP_015387990.1 HD family phosphohydrolase -
  BAPNAU_RS06440 (BAPNAU_1220) ybeY 1294127..1294600 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  BAPNAU_RS06445 (BAPNAU_1221) - 1294581..1294955 (+) 375 WP_038461537.1 diacylglycerol kinase family protein -
  BAPNAU_RS06450 (BAPNAU_1222) - 1295079..1295489 (+) 411 WP_003152976.1 cytidine deaminase -
  BAPNAU_RS06455 (BAPNAU_1223) era 1295470..1296375 (+) 906 WP_007408285.1 GTPase Era -
  BAPNAU_RS20660 (BAPNAU_1224) - 1296531..1296674 (+) 144 WP_007408286.1 YqzL family protein -
  BAPNAU_RS06460 (BAPNAU_1225) recO 1296711..1297478 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  BAPNAU_RS06465 (BAPNAU_1226) glyQ 1297780..1298667 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  BAPNAU_RS06470 (BAPNAU_1227) glyS 1298660..1300699 (+) 2040 WP_021494328.1 glycine--tRNA ligase subunit beta -
  BAPNAU_RS06475 (BAPNAU_1228) ccpN 1300800..1301438 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  BAPNAU_RS06480 (BAPNAU_1229) - 1301464..1302276 (+) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=62649 BAPNAU_RS06460 WP_007408287.1 1296711..1297478(+) (recO) [Bacillus velezensis NAU-B3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=62649 BAPNAU_RS06460 WP_007408287.1 1296711..1297478(+) (recO) [Bacillus velezensis NAU-B3]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment