Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   N2A93_RS00865 Genome accession   NZ_CP104046
Coordinates   139982..140389 (+) Length   135 a.a.
NCBI ID   WP_239639209.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134982..145389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS00845 (N2A93_00845) - 137333..137707 (+) 375 WP_003103833.1 DUF1033 family protein -
  N2A93_RS00850 (N2A93_00850) comGA 137761..138702 (+) 942 WP_004347183.1 competence type IV pilus ATPase ComGA Machinery gene
  N2A93_RS00855 (N2A93_00855) comGB 138614..139669 (+) 1056 WP_142379024.1 competence type IV pilus assembly protein ComGB Machinery gene
  N2A93_RS00860 (N2A93_00860) comGC 139666..139992 (+) 327 WP_004347181.1 competence type IV pilus major pilin ComGC Machinery gene
  N2A93_RS00865 (N2A93_00865) comGD 139982..140389 (+) 408 WP_239639209.1 competence type IV pilus minor pilin ComGD Machinery gene
  N2A93_RS00870 (N2A93_00870) comGE 140361..140660 (+) 300 WP_003104125.1 competence type IV pilus minor pilin ComGE Machinery gene
  N2A93_RS00875 (N2A93_00875) comGF/cglF 140638..141075 (+) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF Machinery gene
  N2A93_RS00880 (N2A93_00880) comGG 141053..141550 (+) 498 WP_004347175.1 competence type IV pilus minor pilin ComGG -
  N2A93_RS00885 (N2A93_00885) comGH 141657..142613 (+) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  N2A93_RS00890 (N2A93_00890) - 142669..143862 (+) 1194 WP_004347172.1 acetate kinase -
  N2A93_RS00895 (N2A93_00895) - 143973..144185 (+) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  N2A93_RS00900 (N2A93_00900) - 144178..144630 (+) 453 WP_003108634.1 hypothetical protein -
  N2A93_RS00905 (N2A93_00905) - 144639..145292 (+) 654 WP_003108632.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15340.74 Da        Isoelectric Point: 9.6000

>NTDB_id=626482 N2A93_RS00865 WP_239639209.1 139982..140389(+) (comGD) [Streptococcus parauberis strain KSP14]
MLNKEVSAFTYFESLLCLVITCFSVIILTTSVGTVFEKVTNNLFYIEFENFYRHSQKISILKRVAGTMVFKEKSISYHNE
TITLPDSIRLGFVNKVKINQFGGNHSLAKINFISSDETVTYTLNLGSGTYKKTKN

Nucleotide


Download         Length: 408 bp        

>NTDB_id=626482 N2A93_RS00865 WP_239639209.1 139982..140389(+) (comGD) [Streptococcus parauberis strain KSP14]
ATGTTAAATAAGGAAGTATCAGCGTTTACCTATTTTGAATCTTTACTATGTCTAGTAATTACTTGTTTTTCAGTTATTAT
ATTGACAACAAGTGTGGGTACAGTATTTGAAAAAGTTACAAATAATCTATTCTATATTGAATTTGAAAATTTTTATCGGC
ATAGTCAAAAAATTTCCATACTAAAACGGGTTGCAGGAACAATGGTATTTAAGGAAAAATCAATTTCATATCACAATGAA
ACAATTACCTTACCAGATTCAATCAGACTTGGATTTGTTAACAAGGTAAAGATAAACCAGTTTGGTGGAAATCATTCCCT
TGCTAAAATAAATTTTATTAGTTCGGATGAAACTGTTACTTATACTCTAAATTTAGGAAGTGGTACTTATAAAAAAACAA
AAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

40.458

97.037

0.393
  comGD Streptococcus mutans UA159

40.458

97.037

0.393