Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   MRX62_RS11390 Genome accession   NZ_CP104027
Coordinates   2402973..2404355 (-) Length   460 a.a.
NCBI ID   WP_173405987.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2397973..2409355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS11365 (MRX62_11380) - 2399455..2399724 (-) 270 WP_023906746.1 HPr family phosphocarrier protein -
  MRX62_RS11370 (MRX62_11385) - 2399717..2400109 (-) 393 WP_010893907.1 PTS sugar transporter subunit IIA -
  MRX62_RS11375 (MRX62_11390) rapZ 2400480..2401352 (-) 873 WP_010893908.1 RNase adapter RapZ -
  MRX62_RS11380 (MRX62_11395) hprK 2401349..2402299 (-) 951 WP_060871861.1 HPr(Ser) kinase/phosphatase -
  MRX62_RS11385 (MRX62_11400) raiA 2402565..2402882 (-) 318 WP_004083778.1 ribosome-associated translation inhibitor RaiA -
  MRX62_RS11390 (MRX62_11405) rpoN/rpoN1 2402973..2404355 (-) 1383 WP_173405987.1 RNA polymerase factor sigma-54 Machinery gene
  MRX62_RS11395 (MRX62_11410) lptB 2404403..2405125 (-) 723 WP_010893911.1 LPS export ABC transporter ATP-binding protein -
  MRX62_RS11400 (MRX62_11415) lptA 2405125..2405655 (-) 531 WP_010893912.1 lipopolysaccharide transport periplasmic protein LptA -
  MRX62_RS11405 (MRX62_11420) lptC 2405633..2406202 (-) 570 WP_010893913.1 LPS export ABC transporter periplasmic protein LptC -
  MRX62_RS11410 (MRX62_11425) - 2406199..2406747 (-) 549 WP_004089213.1 HAD family hydrolase -
  MRX62_RS11415 (MRX62_11430) - 2406765..2407766 (-) 1002 WP_010893914.1 KpsF/GutQ family sugar-phosphate isomerase -
  MRX62_RS11420 (MRX62_11435) - 2407791..2408055 (+) 265 Protein_2226 BolA family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51281.38 Da        Isoelectric Point: 6.3582

>NTDB_id=626463 MRX62_RS11390 WP_173405987.1 2402973..2404355(-) (rpoN/rpoN1) [Xylella fastidiosa subsp. pauca strain 50088]
MKARLRTSIGQQLVMTPQLHQSIRLLQMSNAELQLEITAAIESNPLLDWAENQSSETSEATEREVETEDWQVKESAWDIN
GSKSNENDDNNPAERLTTGNTLTDHLLWQLHLSPLSARDYQIGTVLIDAIEEDGYLRELLSTLTATLAPLSVDESELLPV
LRHIQSFDPTGVAARSLAECLTLQLKSLKEEIPGRALALQIVNSPLLEQLPRSGVTGLARELKRPSQDVQQAVELIRGLD
PRPGKKIGDLEVGTYVVPDCVIWRQHGLWQAALLERAFPQVVLHRGYEQLINRCNDANASYLRNQLQEARWLLKGLEARG
ETLLKVVNSLIRHQTGFLEFGQHALRPLTIRELATELALHESTVSRAIAGKYVRTPRGTLPLRTFFASGISTDSGGETSN
SAIQAIIRRLIETENPRKPLSDAKLAELLKTSGIPVARRTIAKYRDAMNISASHERVRVL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=626463 MRX62_RS11390 WP_173405987.1 2402973..2404355(-) (rpoN/rpoN1) [Xylella fastidiosa subsp. pauca strain 50088]
TTGAAAGCAAGACTGCGAACATCCATCGGACAACAGCTGGTTATGACACCCCAGCTACACCAAAGCATCCGTCTGCTGCA
AATGTCCAACGCCGAATTGCAACTGGAAATCACCGCCGCGATAGAGAGCAATCCACTCTTGGACTGGGCCGAGAACCAAT
CATCGGAGACCAGCGAAGCTACCGAAAGGGAAGTAGAAACAGAAGATTGGCAGGTCAAGGAATCCGCCTGGGATATCAAC
GGCAGTAAAAGCAACGAAAATGACGACAACAACCCTGCTGAACGTCTGACCACCGGGAACACTCTCACTGATCACTTGCT
GTGGCAACTGCACCTCTCCCCACTGTCAGCACGTGATTACCAAATAGGCACCGTCTTGATTGATGCCATAGAAGAAGATG
GTTACCTGCGTGAACTTTTGTCCACACTGACTGCAACCCTGGCCCCGTTATCCGTAGATGAAAGCGAACTGCTACCAGTA
TTACGACACATTCAATCTTTTGACCCGACCGGCGTGGCTGCACGCTCGCTGGCCGAGTGCTTGACACTGCAACTGAAATC
ATTGAAAGAAGAGATACCCGGACGTGCACTTGCACTGCAGATTGTCAACAGCCCACTGCTCGAACAATTGCCGCGCAGTG
GTGTCACCGGACTGGCACGCGAACTGAAACGACCCTCCCAAGACGTCCAACAGGCAGTGGAATTGATCCGTGGACTGGAC
CCTCGCCCAGGTAAGAAAATTGGCGACTTAGAAGTTGGAACCTACGTTGTACCGGACTGTGTGATCTGGCGCCAACATGG
GCTGTGGCAAGCCGCGCTGTTGGAACGTGCATTCCCACAGGTCGTCCTCCACCGCGGCTACGAACAGCTCATCAACCGCT
GCAATGACGCCAATGCGAGCTACCTACGCAACCAACTCCAGGAAGCACGGTGGCTGCTCAAGGGCCTGGAAGCACGCGGT
GAAACCTTGTTAAAAGTGGTAAACAGCCTCATACGTCACCAAACGGGATTCTTGGAGTTCGGCCAACACGCGTTACGTCC
ATTGACGATCCGCGAATTAGCAACCGAACTTGCCCTGCATGAATCCACCGTATCCCGTGCAATTGCTGGCAAGTATGTAC
GCACCCCACGTGGCACCTTACCGCTACGCACCTTTTTCGCTTCAGGAATCAGCACCGACAGCGGCGGAGAGACCTCCAAC
TCTGCCATTCAAGCAATCATCAGACGTCTCATAGAAACTGAAAACCCCCGCAAGCCACTCTCTGACGCCAAACTAGCTGA
ATTGCTGAAGACATCCGGTATCCCAGTAGCGCGACGCACCATAGCAAAGTATCGTGATGCTATGAACATCTCCGCATCCC
ACGAACGCGTCCGAGTCCTCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(94-287)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(300-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

38

100

0.413