Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MRX62_RS04885 Genome accession   NZ_CP104027
Coordinates   921735..922121 (+) Length   128 a.a.
NCBI ID   WP_031336286.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 916735..927121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS04865 (MRX62_04860) - 918147..918332 (-) 186 WP_031336290.1 DUF2065 family protein -
  MRX62_RS04870 (MRX62_04865) hflC 918492..919355 (-) 864 WP_010892981.1 protease modulator HflC -
  MRX62_RS04875 (MRX62_04870) hflK 919352..920491 (-) 1140 WP_060871989.1 FtsH protease activity modulator HflK -
  MRX62_RS04880 (MRX62_04875) - 920638..921642 (+) 1005 WP_031336287.1 oxidoreductase -
  MRX62_RS04885 (MRX62_04880) pilH 921735..922121 (+) 387 WP_031336286.1 twitching motility response regulator PilH Machinery gene
  MRX62_RS04890 (MRX62_04885) - 922705..923055 (-) 351 WP_004083585.1 DMT family protein -
  MRX62_RS04895 (MRX62_04890) - 923624..923824 (+) 201 WP_010892976.1 hypothetical protein -
  MRX62_RS04900 (MRX62_04895) - 924175..924537 (-) 363 Protein_968 H-NS family nucleoid-associated regulatory protein -
  MRX62_RS04905 (MRX62_04900) - 924687..926381 (-) 1695 WP_010892974.1 proline--tRNA ligase -
  MRX62_RS04910 (MRX62_04905) - 926466..926843 (-) 378 WP_031336283.1 DUF4124 domain-containing protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14261.45 Da        Isoelectric Point: 6.7299

>NTDB_id=626424 MRX62_RS04885 WP_031336286.1 921735..922121(+) (pilH) [Xylella fastidiosa subsp. pauca strain 50088]
MARVLIVEDSPSQLLSIQRIVEKLGHETITATDGNTGVEAAKAHLPDLVLMDVVMPKINGFQATRTLKREPATQHVPVIL
VTTKDQDTDRLWGIRQGARAYITKPFSESELLEVMERIFSQPKAKANE

Nucleotide


Download         Length: 387 bp        

>NTDB_id=626424 MRX62_RS04885 WP_031336286.1 921735..922121(+) (pilH) [Xylella fastidiosa subsp. pauca strain 50088]
ATGGCACGCGTTTTGATCGTCGAGGACTCACCGTCACAATTACTCAGTATCCAGAGAATCGTCGAAAAACTAGGGCACGA
AACCATTACCGCAACCGATGGCAACACCGGGGTGGAGGCAGCCAAAGCACATTTACCTGATCTGGTACTGATGGACGTGG
TCATGCCTAAAATTAATGGGTTTCAAGCCACACGCACACTCAAGCGCGAGCCAGCAACGCAACATGTACCAGTCATCCTG
GTAACCACCAAGGACCAAGACACTGATCGGCTATGGGGCATACGCCAGGGCGCGCGCGCCTACATCACCAAGCCTTTCTC
AGAGAGTGAATTGCTAGAAGTCATGGAAAGAATATTCAGCCAACCAAAAGCAAAAGCGAACGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

42.857

92.969

0.398