Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   LJN47_RS07440 Genome accession   NZ_CP086760
Coordinates   1559457..1560770 (-) Length   437 a.a.
NCBI ID   WP_229929720.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3192     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554457..1565770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN47_RS07410 (LJN47_07410) nadC 1554920..1555741 (-) 822 WP_229929716.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LJN47_RS07415 (LJN47_07415) nadA 1555741..1556751 (-) 1011 WP_229929717.1 quinolinate synthase NadA -
  LJN47_RS07420 (LJN47_07420) - 1556741..1557544 (-) 804 WP_229929718.1 phosphatidylserine decarboxylase -
  LJN47_RS07425 (LJN47_07425) - 1557541..1558044 (-) 504 WP_000953102.1 DUF6115 domain-containing protein -
  LJN47_RS07430 (LJN47_07430) - 1558057..1558551 (-) 495 WP_220947644.1 hypothetical protein -
  LJN47_RS07435 (LJN47_07435) mqnP 1558544..1559386 (-) 843 WP_229929719.1 menaquinone biosynthesis prenyltransferase MqnP -
  LJN47_RS07440 (LJN47_07440) comEC/comE3 1559457..1560770 (-) 1314 WP_229929720.1 ComEC/Rec2 family competence protein Machinery gene
  LJN47_RS07445 (LJN47_07445) - 1560767..1562233 (-) 1467 WP_229929721.1 replicative DNA helicase -
  LJN47_RS07450 (LJN47_07450) - 1562244..1563644 (-) 1401 WP_229929722.1 NAD(P)H-hydrate dehydratase -
  LJN47_RS07455 (LJN47_07455) crdS 1563647..1564849 (-) 1203 WP_229930209.1 copper-sensing histidine kinase CrdS -
  LJN47_RS07460 (LJN47_07460) crdR 1564815..1565456 (-) 642 WP_001169784.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50343.39 Da        Isoelectric Point: 9.9664

>NTDB_id=626292 LJN47_RS07440 WP_229929720.1 1559457..1560770(-) (comEC/comE3) [Helicobacter pylori strain 3192]
MKDKTFQGAFELLTTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGRIKSCSFLESLKSCFFQTYSFSLTRKHNFKSHLRHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQAIALS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISIPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=626292 LJN47_RS07440 WP_229929720.1 1559457..1560770(-) (comEC/comE3) [Helicobacter pylori strain 3192]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTATTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCCTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAGGATCAAATCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
TGCGCCATTTCATTGATAGCGTTCATTCCAACGCTTTGGTGGGCAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGAATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGTGTGTATTTTCTTTTCTCTCTTTTTTATACTCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATTT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTAATGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTGGTGTTTTTGAACATGCTCATTATCGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959