Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   LJN47_RS00010 Genome accession   NZ_CP086760
Coordinates   1597..3033 (+) Length   478 a.a.
NCBI ID   WP_229929761.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3192     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN47_RS00005 (LJN47_00005) dnaA 1..1368 (+) 1368 WP_229929760.1 chromosomal replication initiator protein DnaA -
  LJN47_RS00010 (LJN47_00010) comH 1597..3033 (+) 1437 WP_229929761.1 competence protein Machinery gene
  LJN47_RS00020 (LJN47_00020) - 3212..3964 (+) 753 WP_229929762.1 exodeoxyribonuclease III -
  LJN47_RS00025 (LJN47_00025) - 3961..4596 (-) 636 WP_120846319.1 outer membrane protein -
  LJN47_RS00030 (LJN47_00030) - 4600..4947 (-) 348 WP_000837036.1 hypothetical protein -
  LJN47_RS00035 (LJN47_00035) recG 5029..6900 (+) 1872 WP_229929763.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54978.89 Da        Isoelectric Point: 7.6982

>NTDB_id=626272 LJN47_RS00010 WP_229929761.1 1597..3033(+) (comH) [Helicobacter pylori strain 3192]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTTIVYQPLDE
KLSLETSLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPMQKPQNKPHSSQQSLQNFSYPEPKLGSKNSKNSLLQPLAT
PNKTSPTNETQTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLTNNTSNADISRKNNESNENRDNVEKQAIRDPNVREFAC
GKWVYDDENLQAYRPSILKRIDEYKQTATDITPCDYSHTENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARS
STEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAIYERPKQDDQIDPTFYETSELAYSSTRKSEITHNELN
LNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=626272 LJN47_RS00010 WP_229929761.1 1597..3033(+) (comH) [Helicobacter pylori strain 3192]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTACAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACAAGCTTAAACCCCAACCGCCCCACTATCCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAACAAGCCCCATTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACCCAGAACCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAACAAGCCCCACTAACGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTTTTTGTAGCACCACCCACCGAAAAAACGCTCACTAACAACACCTCTAACGCTGATATTAGTAGAA
AAAACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAGAGAATTTGCGTGC
GGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAATACAAACAGAC
TGCGACAGATATTACCCCTTGCGATTACAGCCACACTGAAAATAAAAGCGGTAAAATCACTACCCCTTATACTAAAATCT
CTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGAAGC
TCTACAGAAAAATGCAAAAGGGCTAGAGCACGAAAAGACGGCACGACTAGGCAATGCTATTTAATAGAAGAGCCTTTAAA
ACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATCAAA
TAGATCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAACGAACTGAAT
TTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATA
CAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCA
AAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

93.333

100

0.937