Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   N0B18_RS11030 Genome accession   NZ_CP103995
Coordinates   2073713..2075488 (-) Length   591 a.a.
NCBI ID   WP_046160493.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2068713..2080488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B18_RS11010 (N0B18_11010) desE 2069086..2070144 (+) 1059 WP_029726828.1 fatty acid desaturase DesE -
  N0B18_RS11015 (N0B18_11015) desK 2070264..2071376 (+) 1113 WP_029318043.1 two-component sensor histidine kinase DesK -
  N0B18_RS11020 (N0B18_11020) desR 2071395..2071994 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  N0B18_RS11025 (N0B18_11025) walN 2072602..2073465 (-) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  N0B18_RS11030 (N0B18_11030) recQ 2073713..2075488 (-) 1776 WP_046160493.1 DNA helicase RecQ Machinery gene
  N0B18_RS11040 (N0B18_11040) azoJ 2076048..2076674 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  N0B18_RS11045 (N0B18_11045) stpP 2076826..2077317 (-) 492 WP_069964177.1 TraR/DksA family transcriptional regulator -
  N0B18_RS11050 (N0B18_11050) - 2077392..2077724 (-) 333 WP_014480020.1 hypothetical protein -
  N0B18_RS11055 (N0B18_11055) - 2077802..2078029 (+) 228 WP_014480021.1 hypothetical protein -
  N0B18_RS11060 (N0B18_11060) yocM 2078016..2078492 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  N0B18_RS11065 (N0B18_11065) - 2078559..2078822 (+) 264 WP_004399338.1 hypothetical protein -
  N0B18_RS11070 (N0B18_11070) - 2078827..2079060 (+) 234 WP_003231251.1 hypothetical protein -
  N0B18_RS11075 (N0B18_11075) yozO 2079154..2079498 (-) 345 WP_003220141.1 PH domain-containing protein -
  N0B18_RS11080 (N0B18_11080) yozC 2079854..2080057 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67355.79 Da        Isoelectric Point: 6.2902

>NTDB_id=626255 N0B18_RS11030 WP_046160493.1 2073713..2075488(-) (recQ) [Bacillus subtilis strain SRCM117109]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPNACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAADQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=626255 N0B18_RS11030 WP_046160493.1 2073713..2075488(-) (recQ) [Bacillus subtilis strain SRCM117109]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTCCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTCTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGTAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGATC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(403-507)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993