Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LN920_RS04490 Genome accession   NZ_CP086759
Coordinates   928390..929208 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ACI713     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 923390..934208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN920_RS04475 (LN920_04475) pilE 923608..924033 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  LN920_RS04480 (LN920_04480) pilY2 924030..924512 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  LN920_RS04485 (LN920_04485) - 924525..928378 (-) 3854 Protein_867 PilC/PilY family type IV pilus protein -
  LN920_RS04490 (LN920_04490) pilX 928390..929208 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LN920_RS04495 (LN920_04495) pilW 929205..930206 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  LN920_RS04500 (LN920_04500) pilV 930207..930767 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  LN920_RS04505 (LN920_04505) fimU 930761..931234 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LN920_RS04510 (LN920_04510) ispH 931404..932354 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LN920_RS04515 (LN920_04515) gmk 932477..933106 (+) 630 WP_000015937.1 guanylate kinase -
  LN920_RS04520 (LN920_04520) rpoZ 933179..933457 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LN920_RS04525 (LN920_04525) - 933496..933625 (+) 130 Protein_875 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=626235 LN920_RS04490 WP_000149374.1 928390..929208(-) (pilX) [Acinetobacter baumannii strain ACI713]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=626235 LN920_RS04490 WP_000149374.1 928390..929208(-) (pilX) [Acinetobacter baumannii strain ACI713]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993