Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BN867_RS07370 Genome accession   NC_022529
Coordinates   1436408..1436719 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni 4031     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431408..1441719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN867_RS07350 (BN867_14420) ctsE 1432277..1433836 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  BN867_RS07355 (BN867_14430) ctsX 1433826..1434413 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  BN867_RS07360 (BN867_14440) ctsP 1434417..1435025 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  BN867_RS07365 (BN867_14450) ctsD 1435018..1436430 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BN867_RS07370 (BN867_14460) ctsR 1436408..1436719 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  BN867_RS07375 (BN867_14470) nifJ 1436743..1440303 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BN867_RS07380 (BN867_14480) - 1440396..1441037 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=62623 BN867_RS07370 WP_002862131.1 1436408..1436719(-) (ctsR) [Campylobacter jejuni 4031]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=62623 BN867_RS07370 WP_002862131.1 1436408..1436719(-) (ctsR) [Campylobacter jejuni 4031]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment