Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LOD77_RS08800 Genome accession   NZ_CP086728
Coordinates   1731314..1732027 (-) Length   237 a.a.
NCBI ID   WP_216806378.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS20     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726314..1737027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD77_RS08780 (LOD77_08770) trxA 1727148..1727462 (-) 315 WP_172071378.1 thioredoxin -
  LOD77_RS08785 (LOD77_08775) - 1727723..1730056 (-) 2334 WP_274505391.1 endonuclease MutS2 -
  LOD77_RS08790 (LOD77_08780) - 1730394..1730942 (-) 549 WP_274505392.1 CvpA family protein -
  LOD77_RS08795 (LOD77_08785) - 1730939..1731256 (-) 318 WP_024391756.1 hypothetical protein -
  LOD77_RS08800 (LOD77_08790) treR 1731314..1732027 (-) 714 WP_216806378.1 trehalose operon repressor Regulator
  LOD77_RS08805 (LOD77_08795) treP 1732258..1734258 (+) 2001 WP_274505393.1 PTS system trehalose-specific EIIBC component -
  LOD77_RS08810 (LOD77_08800) treC 1734335..1735969 (+) 1635 WP_174846366.1 alpha,alpha-phosphotrehalase -
  LOD77_RS08815 (LOD77_08805) - 1736009..1736302 (+) 294 WP_216806376.1 iron chaperone -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27612.57 Da        Isoelectric Point: 5.9178

>NTDB_id=626211 LOD77_RS08800 WP_216806378.1 1731314..1732027(-) (treR) [Streptococcus parasuis strain SS20]
MKKYQEIYNDLKEKIRTNVYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKQELLNFPISGLT
SYQELTDALQLQSDTAVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRYIDGTVSVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=626211 LOD77_RS08800 WP_216806378.1 1731314..1732027(-) (treR) [Streptococcus parasuis strain SS20]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATGTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACAGGAACTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAGCGGTTGTTGATTTGGAGCTCATTACAGTAAATAG
TAATTTATCTCAATTAACAGGATTTGAACCATTTAGTAAGGTATGGAAAATTGTACGTACAAGGTACATAGATGGAACGG
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCGAAGATGGATAAAGAAATTGCAAAAGGTTCAATCTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCCTATGCTCAGAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTATTGATAAAATCAAGAGTTTTTCTAGGCGATACACAACAATTTC
AATATACTGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.855

98.734

0.502