Detailed information NTG0626205

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: LOD77_RS07265
• Genome accession: NZ_CP086728
• Coordinates: 1418617..1419552 (-)
• Length: 311 a.a.
• NCBI ID: WP_216806515.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SS20
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1413617..1424552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOD77_RS07235 (LOD77_07225)	-	1413795..1415435 (-)	1641	WP_274505945.1	polysaccharide biosynthesis protein	-
LOD77_RS07240 (LOD77_07230)	yghU	1415691..1416479 (-)	789	WP_274505239.1	glutathione-dependent disulfide-bond oxidoreductase	-
LOD77_RS07245 (LOD77_07235)	-	1416488..1416778 (-)	291	WP_171989863.1	hypothetical protein	-
LOD77_RS07250 (LOD77_07240)	rplA	1416884..1417573 (-)	690	WP_274505241.1	50S ribosomal protein L1	-
LOD77_RS07255 (LOD77_07245)	rplK	1417614..1418039 (-)	426	WP_024382554.1	50S ribosomal protein L11	-
LOD77_RS07260 (LOD77_07250)	-	1418194..1418562 (+)	369	WP_274505243.1	DUF3397 domain-containing protein	-
LOD77_RS07265 (LOD77_07255)	amiF	1418617..1419552 (-)	936	WP_216806515.1	ATP-binding cassette domain-containing protein	Regulator
LOD77_RS07270 (LOD77_07260)	oppD	1419549..1420592 (-)	1044	WP_171989134.1	ABC transporter ATP-binding protein	Regulator
LOD77_RS07275 (LOD77_07265)	-	1420607..1421638 (-)	1032	WP_024396826.1	ABC transporter permease	-
LOD77_RS07280 (LOD77_07270)	-	1421649..1422563 (-)	915	WP_171989135.1	ABC transporter permease	-
LOD77_RS07285 (LOD77_07275)	-	1422634..1424280 (-)	1647	WP_174845523.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35068.81 Da
• Isoelectric Point: 5.8231

>NTDB_id=626205 LOD77_RS07265 WP_216806515.1 1418617..1419552(-) (amiF) [Streptococcus parasuis strain SS20]
MSENRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTPSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPLHPYTKSLLSAIPEPDPEFEKDRVHMEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide

• Length: 936 bp

>NTDB_id=626205 LOD77_RS07265 WP_216806515.1 1418617..1419552(-) (amiF) [Streptococcus parasuis strain SS20]
ATGAGCGAAAATAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CGGTTGGCCGTACCATTTTAAAGTTGTATGACTATAATGCTGGTGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGTTTGACTCCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACGCGTTATCCGCATGAGTTCTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATCGCTGACGAACCAATCTCAGCTTTAGATGTATC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTACCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGATCCACTTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAGA
TCGTGTCCATATGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	52.597	99.035	0.521
amiF	Streptococcus thermophilus LMG 18311	52.273	99.035	0.518
amiF	Streptococcus salivarius strain HSISS4	51.948	99.035	0.514