Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LOD77_RS00730 Genome accession   NZ_CP086728
Coordinates   143454..144821 (+) Length   455 a.a.
NCBI ID   WP_130554220.1    Uniprot ID   A0A4Q8L3V7
Organism   Streptococcus parasuis strain SS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 138454..149821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD77_RS00700 (LOD77_00700) - 138857..139651 (-) 795 WP_274505515.1 formate/nitrite transporter family protein -
  LOD77_RS00705 (LOD77_00705) - 139881..141126 (-) 1246 Protein_118 NAD(P)H-dependent oxidoreductase -
  LOD77_RS00710 (LOD77_00710) - 141141..141743 (-) 603 WP_274505516.1 NADPH-dependent FMN reductase -
  LOD77_RS00715 (LOD77_00715) - 141871..142230 (+) 360 WP_216806204.1 YbaN family protein -
  LOD77_RS00720 (LOD77_00720) - 142461..142904 (+) 444 WP_105116088.1 dUTP diphosphatase -
  LOD77_RS00725 (LOD77_00725) - 142914..143447 (+) 534 WP_274505517.1 histidine phosphatase family protein -
  LOD77_RS00730 (LOD77_00730) radA 143454..144821 (+) 1368 WP_130554220.1 DNA repair protein RadA Machinery gene
  LOD77_RS00735 (LOD77_00735) - 144945..145439 (+) 495 WP_274505518.1 carbonic anhydrase -
  LOD77_RS00740 (LOD77_00740) - 145639..146397 (+) 759 WP_130554218.1 TIGR00266 family protein -
  LOD77_RS00745 - 146568..146693 (+) 126 WP_274505519.1 hypothetical protein -
  LOD77_RS00750 (LOD77_00745) - 146680..147057 (+) 378 WP_274505520.1 hypothetical protein -
  LOD77_RS00755 (LOD77_00750) gltX 147442..148896 (+) 1455 WP_274505521.1 glutamate--tRNA ligase -
  LOD77_RS00760 (LOD77_00755) - 148937..149449 (-) 513 WP_239604450.1 adenylate kinase -
  LOD77_RS00765 (LOD77_00760) - 149446..149811 (-) 366 WP_174846595.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49884.38 Da        Isoelectric Point: 6.1911

>NTDB_id=626179 LOD77_RS00730 WP_130554220.1 143454..144821(+) (radA) [Streptococcus parasuis strain SS20]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPSMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=626179 LOD77_RS00730 WP_130554220.1 143454..144821(+) (radA) [Streptococcus parasuis strain SS20]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTTGAAGTCGCTGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAACATGGAGGAGTTTAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGAATTGGCAAATCCACCCTACT
CTTGCAGGTTTCGACCCAGCTTTCGACCATTGGTACCGTCCTCTATGTGTCCGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAAAAGATTAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATTTCTAGCGTACAAGG
TTCTGTCAGTCAGGTGCGTGAAGTGACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAAGGC
GAGCGGCAGCATACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGAGCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAAGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGTGAA
ATCCGCCGTGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCCCTGACCGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACAACAATTGGCGAAGTTCTGCAAAAAGTGT
TTAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q8L3V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.56

0.62