Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   LOD77_RS00460 Genome accession   NZ_CP086728
Coordinates   81512..81982 (+) Length   156 a.a.
NCBI ID   WP_024392830.1    Uniprot ID   A0A9X4RQ13
Organism   Streptococcus parasuis strain SS20     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 76512..86982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD77_RS00430 (LOD77_00425) recA 77613..78767 (+) 1155 WP_171989010.1 recombinase RecA Machinery gene
  LOD77_RS00435 (LOD77_00430) spx 78981..79379 (+) 399 WP_024392835.1 transcriptional regulator Spx -
  LOD77_RS00440 (LOD77_00435) - 79489..79755 (+) 267 WP_274505497.1 IreB family regulatory phosphoprotein -
  LOD77_RS00445 (LOD77_00440) ruvX 79755..80174 (+) 420 WP_130554426.1 Holliday junction resolvase RuvX -
  LOD77_RS00450 (LOD77_00445) - 80186..80506 (+) 321 WP_024392832.1 DUF1292 domain-containing protein -
  LOD77_RS00455 (LOD77_00450) - 80782..81330 (+) 549 WP_174846502.1 nucleotidyltransferase family protein -
  LOD77_RS00460 (LOD77_00455) comX/sigX 81512..81982 (+) 471 WP_024392830.1 sigma-70 family RNA polymerase sigma factor Regulator
  LOD77_RS00475 (LOD77_00470) - 82764..84035 (-) 1272 WP_239604416.1 replication-associated recombination protein A -
  LOD77_RS00480 (LOD77_00475) - 84105..84440 (+) 336 WP_274505498.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  LOD77_RS00485 (LOD77_00480) - 84442..84912 (+) 471 WP_274505499.1 DUF3013 family protein -
  LOD77_RS00490 (LOD77_00485) - 84944..85405 (+) 462 WP_274505915.1 NUDIX hydrolase -
  LOD77_RS00495 (LOD77_00490) prmA 85960..86913 (+) 954 WP_274505500.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19013.78 Da        Isoelectric Point: 7.4572

>NTDB_id=626178 LOD77_RS00460 WP_024392830.1 81512..81982(+) (comX/sigX) [Streptococcus parasuis strain SS20]
MKFEQTYAKVSGIVHKARQEFYIKLWEKSDWDQEGMMVLYELLEKQPQLYDDKEKLYVYFKVKFRNHIKDVIRKQESYKR
KFDRMAHEDIHDLSHVVKSPGLVNDEFILLQDMLQSYRQQLNSEQLEQYEKLMAGQSFSGRKQMIRDLQDYLADFK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=626178 LOD77_RS00460 WP_024392830.1 81512..81982(+) (comX/sigX) [Streptococcus parasuis strain SS20]
ATGAAATTTGAACAAACTTACGCAAAGGTTAGTGGTATTGTACATAAGGCTCGTCAAGAATTTTATATCAAGTTATGGGA
AAAGTCAGACTGGGATCAAGAAGGAATGATGGTATTATATGAATTATTAGAAAAACAACCCCAGTTATATGATGATAAAG
AAAAATTATATGTATATTTTAAAGTAAAATTTAGAAATCATATAAAGGATGTTATACGCAAGCAAGAAAGTTACAAAAGA
AAATTTGACAGAATGGCACATGAAGACATCCATGACCTATCCCATGTTGTGAAATCACCTGGACTGGTTAACGATGAATT
TATTCTTCTGCAAGATATGTTACAGTCTTATCGGCAACAGTTAAATTCAGAACAACTAGAGCAATACGAAAAATTGATGG
CAGGGCAGAGTTTTAGTGGCCGAAAACAAATGATTCGTGATTTGCAAGACTATTTAGCAGATTTTAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

64.744

100

0.647
  comX/sigX Streptococcus suis isolate S10

64.103

100

0.641
  comX/sigX Streptococcus suis P1/7

64.103

100

0.641
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

47.742

99.359

0.474
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

47.742

99.359

0.474
  comX/sigX Streptococcus mutans UA159

46.753

98.718

0.462
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

43.137

98.077

0.423
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

42.484

98.077

0.417
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

41.83

98.077

0.41
  comX/comX2 Streptococcus pneumoniae R6

42.384

96.795

0.41
  comX/comX2 Streptococcus pneumoniae D39

42.384

96.795

0.41
  comX/comX1 Streptococcus pneumoniae D39

42.384

96.795

0.41
  comX/comX1 Streptococcus pneumoniae Rx1

42.384

96.795

0.41
  comX/comX1 Streptococcus pneumoniae R6

42.384

96.795

0.41
  comX/comX2 Streptococcus pneumoniae Rx1

42.384

96.795

0.41
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

40.764

100

0.41
  comX/comX1 Streptococcus pneumoniae TIGR4

41.722

96.795

0.404
  comX/comX2 Streptococcus pneumoniae TIGR4

41.722

96.795

0.404
  comX Streptococcus sobrinus strain NIDR 6715-7

41.176

98.077

0.404
  comX/sigX Streptococcus salivarius strain HSISS4

41.176

98.077

0.404
  comX Streptococcus salivarius SK126

41.176

98.077

0.404
  comX Streptococcus thermophilus LMG 18311

40.523

98.077

0.397
  comX Streptococcus thermophilus LMD-9

40.523

98.077

0.397
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

40.523

98.077

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.333

96.154

0.378
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.333

96.154

0.378
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.333

96.154

0.378
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.333

96.154

0.378
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.333

96.154

0.378
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.333

96.154

0.378