Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LM507_RS02890 Genome accession   NZ_CP086726
Coordinates   607962..609635 (-) Length   557 a.a.
NCBI ID   WP_002386195.1    Uniprot ID   A0A3N3YTH3
Organism   Enterococcus faecalis strain E533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 602962..614635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM507_RS02860 (LM507_02860) ftsL 603977..604384 (-) 408 WP_002358883.1 cell division protein FtsL -
  LM507_RS02865 (LM507_02865) rsmH 604401..605357 (-) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  LM507_RS02870 (LM507_02870) mraZ 605372..605857 (-) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  LM507_RS02875 (LM507_02875) - 606091..606483 (-) 393 WP_002383401.1 DUF3397 domain-containing protein -
  LM507_RS02880 (LM507_02880) - 606728..607693 (+) 966 WP_002387038.1 magnesium transporter CorA family protein -
  LM507_RS02885 (LM507_02885) - 607761..607871 (+) 111 WP_002383399.1 DUF4044 domain-containing protein -
  LM507_RS02890 (LM507_02890) recN 607962..609635 (-) 1674 WP_002386195.1 DNA repair protein RecN Machinery gene
  LM507_RS02895 (LM507_02895) - 609653..610102 (-) 450 WP_002358881.1 arginine repressor -
  LM507_RS02900 (LM507_02900) - 610241..611056 (-) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  LM507_RS02905 (LM507_02905) - 611070..611951 (-) 882 WP_002371528.1 polyprenyl synthetase family protein -
  LM507_RS02910 (LM507_02910) - 611951..612181 (-) 231 WP_002364628.1 exodeoxyribonuclease VII small subunit -
  LM507_RS02915 (LM507_02915) xseA 612183..613529 (-) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  LM507_RS02920 (LM507_02920) - 613539..614384 (-) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62627.01 Da        Isoelectric Point: 4.5521

>NTDB_id=626134 LM507_RS02890 WP_002386195.1 607962..609635(-) (recN) [Enterococcus faecalis strain E533]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=626134 LM507_RS02890 WP_002386195.1 607962..609635(-) (recN) [Enterococcus faecalis strain E533]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCACATTGATATGTTAGATGAATTTGGTGGAAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATTACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGCGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCATTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGGCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3N3YTH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501