Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LMF34_RS01065 Genome accession   NZ_CP086678
Coordinates   187233..187862 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EFF60     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 182233..192862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMF34_RS01050 helD 182475..184529 (-) 2055 WP_248422702.1 DNA helicase IV -
  LMF34_RS01055 yccF 184652..185098 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LMF34_RS01060 yccS 185108..187270 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LMF34_RS01065 sxy/tfoX 187233..187862 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LMF34_RS01070 sulA 188081..188590 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LMF34_RS01075 ompA 188947..189999 (+) 1053 WP_000750418.1 porin OmpA -
  LMF34_RS01080 matP 190074..190526 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LMF34_RS01085 ycbZ 190712..192472 (+) 1761 WP_000156476.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=626083 LMF34_RS01065 WP_000839153.1 187233..187862(-) (sxy/tfoX) [Escherichia coli strain EFF60]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=626083 LMF34_RS01065 WP_000839153.1 187233..187862(-) (sxy/tfoX) [Escherichia coli strain EFF60]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1