Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NYR17_RS08140 Genome accession   NZ_CP103950
Coordinates   1736138..1737091 (+) Length   317 a.a.
NCBI ID   WP_302505218.1    Uniprot ID   -
Organism   Riemerella columbina strain TH22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731138..1742091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR17_RS08120 (NYR17_08120) ruvA 1734652..1735236 (-) 585 WP_302505214.1 Holliday junction branch migration protein RuvA Machinery gene
  NYR17_RS08125 (NYR17_08125) rpmB 1735435..1735671 (+) 237 WP_302505215.1 50S ribosomal protein L28 -
  NYR17_RS08130 (NYR17_08130) rpmG 1735682..1735864 (+) 183 WP_302505216.1 50S ribosomal protein L33 -
  NYR17_RS08135 (NYR17_08135) - 1735884..1736033 (+) 150 WP_302505217.1 DUF4295 family protein -
  NYR17_RS08140 (NYR17_08140) pilA 1736138..1737091 (+) 954 WP_302505218.1 signal recognition particle-docking protein FtsY Machinery gene
  NYR17_RS08145 (NYR17_08145) - 1737136..1737966 (+) 831 WP_302505219.1 GLPGLI family protein -
  NYR17_RS08150 (NYR17_08150) - 1738263..1738514 (+) 252 WP_302505220.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  NYR17_RS08155 (NYR17_08155) - 1738704..1739774 (-) 1071 WP_302505221.1 DUF3810 domain-containing protein -
  NYR17_RS08160 (NYR17_08160) - 1739758..1741236 (-) 1479 WP_302505222.1 MFS transporter -
  NYR17_RS08165 (NYR17_08165) - 1741279..1742016 (-) 738 WP_302505223.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34520.60 Da        Isoelectric Point: 5.5113

>NTDB_id=626003 NYR17_RS08140 WP_302505218.1 1736138..1737091(+) (pilA) [Riemerella columbina strain TH22]
MSWFKKIFKKEEKETLNKGLEKSSQGFFEKISKAVVGKSKVDDEVLDDLEEILIASDVGAATTIKIIERIENRVARDKYI
GTDELDQILREEISGLLLENPHADTGNIDTTKKPYVIMVVGVNGVGKTTTIGKLAHQFKSQGKKVVLGAADTFRAAAVDQ
LVIWSERVGVPIVKQNMGSDPASVAFDTVQSAVAQDADVVLIDTAGRLHNKVNLMNELSKIKRVMQKVVPDAPHEVLLVL
DGSTGQNAFEQAKQFTAATEVTALAVTKLDGTAKGGVVIGISDQFQVPVKYIGVGEKMEDLQLFNGTEFVDSFFRKA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=626003 NYR17_RS08140 WP_302505218.1 1736138..1737091(+) (pilA) [Riemerella columbina strain TH22]
ATGAGCTGGTTCAAAAAAATATTCAAAAAAGAAGAAAAAGAAACCTTAAATAAAGGCTTAGAAAAATCAAGCCAAGGCTT
CTTTGAAAAAATATCCAAAGCCGTTGTTGGTAAAAGTAAAGTAGATGATGAAGTCTTAGATGACTTAGAGGAAATCCTCA
TTGCCTCCGATGTGGGCGCCGCTACTACCATTAAAATTATAGAACGCATAGAAAACCGTGTGGCACGGGATAAATACATC
GGTACAGATGAGTTAGACCAAATTTTAAGAGAAGAAATTTCAGGGCTTCTTTTAGAAAATCCACACGCCGATACGGGCAA
TATAGACACCACCAAAAAGCCTTATGTGATTATGGTGGTCGGCGTGAACGGCGTAGGAAAAACCACTACCATTGGCAAAC
TCGCCCACCAATTTAAATCCCAAGGGAAGAAAGTGGTTCTCGGTGCGGCGGATACCTTCCGTGCGGCAGCTGTAGACCAG
TTGGTCATCTGGAGCGAGCGCGTGGGCGTGCCTATCGTTAAACAAAATATGGGTTCCGATCCCGCCTCTGTTGCTTTTGA
TACCGTGCAATCTGCCGTGGCTCAAGATGCCGATGTGGTACTCATTGACACCGCTGGGCGACTTCACAATAAAGTCAATT
TGATGAACGAACTTTCTAAAATCAAGCGCGTAATGCAGAAGGTAGTCCCTGATGCGCCCCACGAGGTGCTTTTGGTTTTA
GATGGAAGTACAGGGCAAAACGCCTTTGAGCAAGCCAAACAATTTACCGCTGCAACAGAAGTTACTGCATTGGCTGTCAC
CAAGTTAGATGGTACCGCCAAAGGTGGCGTAGTGATAGGAATTTCTGACCAGTTCCAAGTGCCTGTGAAATACATTGGCG
TTGGCGAGAAAATGGAAGACCTCCAATTATTTAATGGAACCGAGTTTGTAGATTCTTTTTTCAGAAAAGCTTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(28-93)

SRP54-type protein, GTPase domain (SRP54)

(115-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

44.518

94.953

0.423