Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | HK939_RS03820 | Genome accession | NZ_CP086657 |
| Coordinates | 735936..736241 (-) | Length | 101 a.a. |
| NCBI ID | WP_002834517.1 | Uniprot ID | A0A5T0ZVB2 |
| Organism | Campylobacter coli strain P4581 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 730936..741241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK939_RS03785 (HK939_003770) | - | 731351..732112 (+) | 762 | WP_025431509.1 | ATP-binding protein | - |
| HK939_RS03790 (HK939_003775) | - | 732109..732792 (+) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| HK939_RS03795 (HK939_003780) | thiD | 732792..733604 (+) | 813 | WP_002797568.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| HK939_RS03800 (HK939_003785) | thiE | 733594..734226 (+) | 633 | WP_002834515.1 | thiamine phosphate synthase | - |
| HK939_RS03805 (HK939_003790) | - | 734204..734833 (+) | 630 | WP_002777119.1 | uroporphyrinogen-III synthase | - |
| HK939_RS03810 (HK939_003795) | - | 734826..735278 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| HK939_RS03815 (HK939_003800) | - | 735275..735943 (-) | 669 | WP_002797569.1 | hypothetical protein | - |
| HK939_RS03820 (HK939_003805) | ctsT | 735936..736241 (-) | 306 | WP_002834517.1 | hypothetical protein | Machinery gene |
| HK939_RS03825 (HK939_003810) | proC | 736238..736975 (-) | 738 | WP_002834520.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| HK939_RS03830 (HK939_003815) | fliW | 736975..737364 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| HK939_RS03835 (HK939_003820) | - | 737528..738175 (+) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| HK939_RS03840 (HK939_003825) | lon | 738191..740566 (+) | 2376 | WP_002783351.1 | endopeptidase La | - |
| HK939_RS03845 (HK939_003830) | rpsR | 740622..740882 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12456.28 Da Isoelectric Point: 6.0633
>NTDB_id=625992 HK939_RS03820 WP_002834517.1 735936..736241(-) (ctsT) [Campylobacter coli strain P4581]
MKVAFSLLELILYIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILYIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=625992 HK939_RS03820 WP_002834517.1 735936..736241(-) (ctsT) [Campylobacter coli strain P4581]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTATATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTATATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |