Detailed information NTG0625990

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: HK939_RS03485
• Genome accession: NZ_CP086657
• Coordinates: 667288..668247 (-)
• Length: 319 a.a.
• NCBI ID: WP_032685565.1
• Uniprot ID: -
• Organism: Campylobacter coli strain P4581
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 662288..673247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK939_RS03455 (HK939_003440)	-	663253..663453 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
HK939_RS03460 (HK939_003445)	-	663483..663782 (-)	300	WP_002777238.1	cytochrome c	-
HK939_RS03465 (HK939_003450)	-	663859..664422 (+)	564	WP_002787747.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
HK939_RS03470 (HK939_003455)	rfaD	664419..665372 (+)	954	WP_060793143.1	ADP-glyceromanno-heptose 6-epimerase	-
HK939_RS03475 (HK939_003460)	rfaE1	665365..666750 (+)	1386	WP_002831599.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
HK939_RS03480 (HK939_003465)	gmhA	666747..667307 (+)	561	WP_052783332.1	D-sedoheptulose 7-phosphate isomerase	-
HK939_RS03485 (HK939_003470)	waaF	667288..668247 (-)	960	WP_032685565.1	lipopolysaccharide heptosyltransferase II	Regulator
HK939_RS03490 (HK939_003475)	-	668306..669123 (+)	818	Protein_676	glycosyltransferase family 2 protein	-
HK939_RS03495 (HK939_003480)	-	669293..670258 (+)	966	WP_229133667.1	polysaccharide pyruvyl transferase family protein	-
HK939_RS03500 (HK939_003485)	-	670742..671086 (+)	345	WP_002780624.1	hypothetical protein	-
HK939_RS09535	-	671096..671284 (+)	189	WP_032682936.1	sulfatase-like hydrolase/transferase	-
HK939_RS03505 (HK939_003490)	-	671289..672065 (+)	777	WP_050456352.1	sulfatase-like hydrolase/transferase	-
HK939_RS03510 (HK939_003495)	-	672162..672434 (+)	273	WP_002780626.1	hypothetical protein	-
HK939_RS09540	-	672620..672751 (+)	132	WP_004283885.1	hypothetical protein	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36723.20 Da
• Isoelectric Point: 10.3041

>NTDB_id=625990 HK939_RS03485 WP_032685565.1 667288..668247(-) (waaF) [Campylobacter coli strain P4581]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKTIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide

• Length: 960 bp

>NTDB_id=625990 HK939_RS03485 WP_032685565.1 667288..668247(-) (waaF) [Campylobacter coli strain P4581]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAACCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.357	100	0.944