Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   HK939_RS01770 Genome accession   NZ_CP086657
Coordinates   349457..350641 (+) Length   394 a.a.
NCBI ID   WP_057030633.1    Uniprot ID   -
Organism   Campylobacter coli strain P4581     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 344457..355641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK939_RS01755 (HK939_001745) - 345171..345902 (+) 732 WP_002801035.1 class II aldolase/adducin family protein -
  HK939_RS01760 (HK939_001750) - 345899..347395 (+) 1497 WP_216102458.1 sugar phosphate nucleotidyltransferase -
  HK939_RS01765 (HK939_001755) - 347433..349460 (+) 2028 WP_229133641.1 capsular polysaccharide biosynthesis protein -
  HK939_RS01770 (HK939_001760) kpsS 349457..350641 (+) 1185 WP_057030633.1 capsule biosynthesis protein Regulator
  HK939_RS01775 (HK939_001765) - 350709..351830 (+) 1122 WP_002787825.1 hypothetical protein -
  HK939_RS01780 (HK939_001770) - 351827..353197 (+) 1371 WP_002783822.1 cytochrome P450 -
  HK939_RS01785 (HK939_001775) - 353194..353616 (+) 423 WP_002779166.1 hypothetical protein -
  HK939_RS01790 (HK939_001780) acpS 353619..353966 (-) 348 WP_002779165.1 holo-ACP synthase -
  HK939_RS01795 (HK939_001785) fliL 353966..354502 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46667.44 Da        Isoelectric Point: 10.0776

>NTDB_id=625981 HK939_RS01770 WP_057030633.1 349457..350641(+) (kpsS) [Campylobacter coli strain P4581]
MKFRDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSTFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLIFKHHPMDRGYRNYSKLINGLSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPSLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=625981 HK939_RS01770 WP_057030633.1 349457..350641(+) (kpsS) [Campylobacter coli strain P4581]
ATGAAATTTAGAGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCCTTTAGTACTTTTCTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTATTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTAT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGGGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGTATTACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCATTTTACAATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.056

100

0.871