Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LN051_RS10345 Genome accession   NZ_CP086654
Coordinates   2112062..2113438 (-) Length   458 a.a.
NCBI ID   WP_229292442.1    Uniprot ID   -
Organism   Staphylococcus ratti strain CCM 9025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2107062..2118438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN051_RS10320 (LN051_10320) cysE 2107308..2107949 (-) 642 WP_274704561.1 serine O-acetyltransferase -
  LN051_RS10325 (LN051_10325) gltX 2108267..2109721 (-) 1455 WP_229292438.1 glutamate--tRNA ligase -
  LN051_RS10330 (LN051_10330) ispF 2109814..2110290 (-) 477 WP_229292439.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LN051_RS10335 (LN051_10335) ispD 2110283..2110981 (-) 699 WP_229292440.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LN051_RS10340 (LN051_10340) - 2110981..2112045 (-) 1065 WP_229292441.1 PIN/TRAM domain-containing protein -
  LN051_RS10345 (LN051_10345) radA 2112062..2113438 (-) 1377 WP_229292442.1 DNA repair protein RadA Machinery gene
  LN051_RS10350 (LN051_10350) - 2113692..2116169 (-) 2478 WP_229292443.1 ATP-dependent Clp protease ATP-binding subunit -
  LN051_RS10355 (LN051_10355) - 2116182..2117186 (-) 1005 WP_229292444.1 protein arginine kinase -
  LN051_RS10360 (LN051_10360) - 2117170..2117703 (-) 534 WP_420853977.1 UvrB/UvrC motif-containing protein -
  LN051_RS10365 (LN051_10365) - 2117715..2118176 (-) 462 WP_229292445.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50552.24 Da        Isoelectric Point: 8.0041

>NTDB_id=625972 LN051_RS10345 WP_229292442.1 2112062..2113438(-) (radA) [Staphylococcus ratti strain CCM 9025]
MAKKKIVYECTACGHQYPKWMGNCLNCGAWNSMEEVVEQKTTSSKHSVRAQKTNHSQKVQTLKEIKNEKTPRILTNSQEF
NRVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKEKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEIIHE
VVKKVEPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFE
GDEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFN
NPRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIIIATASSFKDQAVDGLDCFIGEVGLTG
EVRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWKFPENIEVIGVSSTNEALKYALKPR

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=625972 LN051_RS10345 WP_229292442.1 2112062..2113438(-) (radA) [Staphylococcus ratti strain CCM 9025]
ATGGCTAAGAAAAAAATAGTATACGAATGTACCGCATGCGGTCACCAGTACCCTAAATGGATGGGGAATTGTCTCAACTG
TGGAGCATGGAATTCAATGGAAGAAGTTGTAGAACAAAAAACGACCAGTTCTAAACATAGCGTACGTGCACAAAAAACAA
ACCATTCTCAAAAAGTGCAAACGCTTAAAGAGATTAAAAACGAAAAAACGCCGAGAATTCTTACAAATAGTCAGGAGTTC
AACCGTGTTCTAGGTGGCGGCATTGTTCAAGGCTCACTTGTCTTAATTGGTGGCGATCCGGGTATTGGTAAATCGACACT
GTTACTTCAGATGTGTGCAGCATTATCCAAAGAAAAGAAAGTTCTGTATATCACGGGGGAAGAGTCATTAAATCAGACGA
AATTGCGTGCCGATCGTCTTGATGAAGATGCCAGTGCTTTAAATGTTTTTGCGGAAACAGATCTTGAAATTATTCATGAA
GTTGTTAAAAAAGTAGAGCCTGAATTGATTGTTGTCGATTCTATACAAACGATTTATCATCCAGAAATCAGTTCTGCGCC
GGGTTCAGTTTCACAAGTTCGTGAAAGTACACAAAGTTTAATGCATATTGCGAAACAAATGAATATCGCCACATTTATCG
TAGGACATGTAACAAAAGAAGGACAAATTGCTGGACCGAGACTATTAGAACATATGGTGGATACAGTGCTCTATTTTGAA
GGAGATGAACACCATGCGTATCGCATATTACGTGCGGTTAAAAACCGTTTTGGTTCAACTAACGAAATGGGTATATTTGA
GATGAAACAAGCGGGGCTTAAAAGTGTACCTAACCCTTCAGAAATGTTTTTGGAGGAGCGCTCTACTAATGTGCCTGGTT
CAACGATTGTGGCCACAATGGAAGGGACGCGTCCGTTGTTAATAGAAGTACAAGCGCTTGTAACCCCAACGACATTTAAT
AATCCTCGACGTATGGCAACTGGAATCGATCATAACCGTTTAAGTTTGTTGATGGCAGTGTTAGAGAAAAAAGAAGGCTA
TTTGCTTCAACAACAAGATGCGTATATAAAAGTTGCAGGTGGCGTCAAACTGAGTGAACCTGCAGTAGATTTAGGGATTA
TTATTGCTACGGCATCAAGTTTCAAAGATCAAGCGGTAGACGGTTTAGATTGTTTTATTGGAGAAGTAGGCTTAACTGGA
GAAGTTCGAAGAGTGTCTAGAATTGAACAAAGAGTCCAAGAAGCGGCGAAATTAGGCTTTAAACGTGTTATTATACCGAA
AACGAATATTGGAGGGTGGAAATTCCCAGAAAATATAGAAGTCATCGGTGTTTCTTCGACAAATGAAGCATTAAAATATG
CATTAAAACCGAGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.474

99.563

0.642
  radA Streptococcus pneumoniae Rx1

57.965

98.69

0.572
  radA Streptococcus pneumoniae D39

57.965

98.69

0.572
  radA Streptococcus pneumoniae R6

57.965

98.69

0.572
  radA Streptococcus pneumoniae TIGR4

57.965

98.69

0.572
  radA Streptococcus mitis NCTC 12261

57.965

98.69

0.572
  radA Streptococcus mitis SK321

57.965

98.69

0.572