Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NYR17_RS02090 Genome accession   NZ_CP103950
Coordinates   445052..446767 (+) Length   571 a.a.
NCBI ID   WP_302506061.1    Uniprot ID   -
Organism   Riemerella columbina strain TH22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 440052..451767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR17_RS02075 (NYR17_02075) - 441885..442949 (-) 1065 WP_302506057.1 efflux RND transporter periplasmic adaptor subunit -
  NYR17_RS02080 (NYR17_02080) - 442972..444321 (-) 1350 WP_302506058.1 TolC family protein -
  NYR17_RS02085 (NYR17_02085) - 444326..444943 (-) 618 WP_302506059.1 TetR/AcrR family transcriptional regulator -
  NYR17_RS02090 (NYR17_02090) recJ 445052..446767 (+) 1716 WP_302506061.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NYR17_RS02095 (NYR17_02095) nadD 446777..447361 (+) 585 WP_302506062.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NYR17_RS02100 (NYR17_02100) - 447383..447724 (+) 342 WP_302506063.1 DUF3817 domain-containing protein -
  NYR17_RS02105 (NYR17_02105) - 447740..448360 (-) 621 WP_302506064.1 hypothetical protein -
  NYR17_RS02110 (NYR17_02110) - 448367..448861 (-) 495 WP_302506066.1 RNA polymerase sigma factor -
  NYR17_RS02115 (NYR17_02115) - 449011..451125 (-) 2115 WP_302506068.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 63952.37 Da        Isoelectric Point: 6.2397

>NTDB_id=625972 NYR17_RS02090 WP_302506061.1 445052..446767(+) (recJ) [Riemerella columbina strain TH22]
MNQKWIFKTEPDEEVVDGLISSIGYGSLESKILVLRGIDDYPKAREFFKPKLEDMHNPFLMADMQKAVERIATAIENGEN
ILVYGDYDVDGTTAVSLMYRYLSKIVGKKYLDFYIPDRNGEGYGISKEGIDYAKANGVSLIIALDCGIKAIDKVDYAQSL
GIDFIICDHHLPGDEIPKAVAVLDPKRQDCRYPFKELSGCGVGFKLCQGLNTIYKIPEAELFELTDLLAISIAADIVSMK
GENRLLAKLGLKHLRKTRNIGLRLLIPKEKLSTFNISNIVFEIAPKINAAGRISHGKAAVELMVSEDLKHATEIVENIIS
LNNDRREMDLSSTTAALQQVVDTHQEDNATTVVYGSDWNKGVIGIVASRLTEVYYKPTVVFTDGNAGEIVASARSVSDFD
VHQALEECSDLFLKFGGHPAAAGLSMEKEKLELFKQRFEAVVAARIQEHQKSPSITIDTVIDVENLNRDFFQFHRKLAPF
GPHNMKPILVLERQEVVGHIKSMGKDGSHVKFHIHNPATGRNIECVGFKMGQYLEDFKHKKFNMAFTLEENHWKGNVTYY
LNVKDVVFIDN

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=625972 NYR17_RS02090 WP_302506061.1 445052..446767(+) (recJ) [Riemerella columbina strain TH22]
ATGAATCAGAAGTGGATTTTTAAAACAGAACCCGATGAAGAGGTAGTAGATGGGCTCATATCCTCCATAGGCTATGGCTC
TTTGGAGTCTAAAATACTGGTGCTTAGAGGGATTGATGATTATCCTAAAGCCCGAGAGTTTTTTAAACCCAAGTTAGAAG
ATATGCACAATCCGTTTCTTATGGCAGATATGCAGAAGGCGGTGGAGCGGATTGCTACAGCCATAGAAAATGGCGAAAAT
ATATTGGTCTACGGCGATTATGATGTAGACGGCACCACGGCAGTTTCTCTAATGTACCGTTACCTTTCTAAAATTGTAGG
GAAGAAGTATTTGGATTTCTACATCCCAGACCGCAACGGCGAGGGCTACGGCATTTCTAAAGAAGGTATAGACTACGCAA
AAGCCAACGGCGTGTCGCTCATCATTGCTTTGGATTGTGGCATTAAGGCGATTGATAAAGTGGATTATGCCCAAAGTTTA
GGCATTGATTTTATCATCTGTGATCACCATTTGCCTGGCGATGAAATCCCCAAAGCTGTGGCAGTATTAGACCCCAAACG
CCAAGATTGTCGCTATCCTTTTAAGGAACTTTCGGGCTGTGGCGTGGGCTTCAAGCTCTGCCAAGGGCTCAACACCATTT
ATAAAATCCCTGAAGCGGAACTATTTGAACTGACCGATTTATTAGCGATTTCCATCGCGGCGGATATTGTTTCTATGAAA
GGCGAAAACCGCTTGCTGGCAAAATTAGGTTTAAAACACCTCCGCAAAACCAGAAATATTGGGCTAAGGCTCCTCATCCC
GAAAGAGAAATTGTCCACTTTTAACATTTCTAATATCGTGTTTGAGATTGCCCCTAAAATCAATGCGGCAGGGCGAATTT
CGCACGGCAAGGCAGCGGTGGAGCTGATGGTTTCTGAAGATTTAAAACACGCCACAGAGATTGTGGAAAACATCATCAGC
CTGAATAACGACCGTCGAGAGATGGACCTCAGCTCTACAACGGCAGCGCTCCAGCAAGTGGTAGACACCCACCAAGAGGA
TAACGCCACCACGGTGGTCTACGGCTCGGATTGGAATAAAGGCGTGATTGGCATTGTGGCTTCTCGGTTGACCGAAGTTT
ATTATAAGCCCACTGTGGTGTTTACCGATGGCAATGCTGGCGAGATTGTGGCTTCTGCGCGCTCTGTGTCAGATTTTGAT
GTGCACCAAGCGCTGGAGGAGTGCTCGGATTTGTTTTTGAAATTTGGAGGACACCCCGCTGCGGCAGGGCTTTCTATGGA
AAAAGAGAAGTTGGAGTTGTTTAAACAACGCTTTGAGGCAGTTGTGGCGGCACGCATCCAAGAGCATCAGAAGAGCCCTT
CCATCACCATAGATACGGTGATTGATGTAGAAAATCTGAACCGAGATTTCTTTCAATTTCATCGTAAATTGGCGCCTTTT
GGTCCACATAATATGAAGCCTATTTTGGTTTTGGAACGGCAGGAAGTGGTGGGGCACATCAAGTCTATGGGGAAAGATGG
CAGCCATGTGAAATTCCACATCCATAACCCAGCCACAGGGCGAAATATAGAGTGTGTAGGTTTTAAAATGGGACAATATC
TGGAAGATTTTAAACATAAGAAATTCAATATGGCATTTACCTTAGAGGAGAACCATTGGAAGGGTAATGTGACCTACTAC
CTTAATGTGAAAGATGTCGTATTCATCGATAATTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(80-229)

DHHA1 domain (DHHA1)

(334-441)

RecJ OB domain (RecJ_OB)

(457-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

37.258

99.65

0.371