Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LN051_RS03585 Genome accession   NZ_CP086654
Coordinates   774798..775526 (-) Length   242 a.a.
NCBI ID   WP_229293226.1    Uniprot ID   -
Organism   Staphylococcus ratti strain CCM 9025     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 769798..780526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN051_RS03565 (LN051_03565) - 770784..771431 (+) 648 WP_229293222.1 redox-sensing transcriptional repressor Rex -
  LN051_RS03570 (LN051_03570) - 771656..772738 (+) 1083 WP_229293223.1 YeeE/YedE family protein -
  LN051_RS03575 (LN051_03575) - 772760..772984 (+) 225 WP_229293224.1 sulfurtransferase TusA family protein -
  LN051_RS03580 (LN051_03580) - 773203..774699 (+) 1497 WP_229293225.1 sucrose-6-phosphate hydrolase -
  LN051_RS03585 (LN051_03585) agrA 774798..775526 (-) 729 WP_229293226.1 quorum-sensing response regulator AgrA Regulator
  LN051_RS03590 (LN051_03590) agrC 775541..776839 (-) 1299 WP_420853988.1 quorum-sensing sensor histidine kinase AgrC -
  LN051_RS03595 (LN051_03595) agrD 776862..776996 (-) 135 WP_229293228.1 cyclic lactone autoinducer peptide AgrD -
  LN051_RS03600 (LN051_03600) - 776999..777562 (-) 564 WP_229293229.1 accessory gene regulator AgrB -
  LN051_RS03605 (LN051_03605) - 778214..779011 (-) 798 WP_229293230.1 carbon-nitrogen family hydrolase -
  LN051_RS03610 (LN051_03610) - 779193..780185 (+) 993 WP_229293231.1 SdrH family protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 28499.65 Da        Isoelectric Point: 5.2301

>NTDB_id=625951 LN051_RS03585 WP_229293226.1 774798..775526(-) (agrA) [Staphylococcus ratti strain CCM 9025]
MKILICEDDPKQRERMESIIQNYIMIEEKPMEIEISTSDPYALLEASKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDMDELRTRIIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDNRFFRCHNSFVLNRHNISHVDAKERIVYFKNDEFCYVSVRNIKKIKK
PE

Nucleotide


Download         Length: 729 bp        

>NTDB_id=625951 LN051_RS03585 WP_229293226.1 774798..775526(-) (agrA) [Staphylococcus ratti strain CCM 9025]
TTGAAAATATTAATCTGTGAAGATGACCCAAAACAAAGAGAGCGAATGGAATCAATCATTCAAAATTATATTATGATTGA
AGAAAAGCCTATGGAAATTGAAATTTCTACAAGTGATCCTTACGCCCTGCTTGAAGCTTCTAAAAATATGACGGATATTG
GTTGCTACTTTTTAGATATCCAACTCGAATCCGATATTAATGGTATTAAGCTTGGCAGTGAAATTAGAAAGCATGATCCC
GTAGGTAATATTATTTTTGTAACAAGCCACAGTGAATTAACCTATCTCACATTTGTCTATAAGCTAGCTGCTATGGATTT
TATTTTTAAAGACGATATGGATGAATTACGCACACGAATTATTGATTGTCTTGAAACGGCATTAAAACGCTTAGACCTAC
TTACTAAAGATAATACAGTCGAAACGATGGAATTAAAACAAGGCAGTAATTCTGTTTATGTTAATTATGATGATGTGATG
TTCTTTGAATCCTCACCAAAATCACATCGCTTAATCGCGCATTTGGATAATCGACAAATTGAATTTTATGGTAACCTTAG
AGAACTTGCCCAAATTGATAATCGTTTCTTTAGATGTCATAATAGTTTCGTTTTAAACAGACATAACATTTCTCATGTTG
ATGCTAAAGAACGTATCGTTTATTTTAAAAATGATGAATTCTGTTACGTTTCAGTACGAAACATTAAAAAAATCAAAAAG
CCAGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

98.347

0.806