Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   NYR19_RS01880 Genome accession   NZ_CP103874
Coordinates   394133..396967 (-) Length   944 a.a.
NCBI ID   WP_302508674.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 389133..401967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS01850 (NYR19_01850) - 390019..390558 (+) 540 WP_302508671.1 hypothetical protein -
  NYR19_RS01855 (NYR19_01855) - 390560..391372 (-) 813 WP_302509354.1 IS3 family transposase -
  NYR19_RS01860 (NYR19_01860) - 391393..391698 (-) 306 WP_302508672.1 transposase -
  NYR19_RS01865 (NYR19_01865) - 391853..392212 (+) 360 WP_155275250.1 DNA-binding transcriptional regulator -
  NYR19_RS01870 (NYR19_01870) - 392293..392946 (-) 654 Protein_346 IS1595 family transposase -
  NYR19_RS01875 (NYR19_01875) - 393040..393618 (-) 579 WP_302508673.1 hypothetical protein -
  NYR19_RS01880 (NYR19_01880) uvrA 394133..396967 (-) 2835 WP_302508674.1 excinuclease ABC subunit UvrA Machinery gene
  NYR19_RS01885 (NYR19_01885) ssb 397109..397624 (+) 516 WP_018347305.1 single-stranded DNA-binding protein Machinery gene
  NYR19_RS01890 (NYR19_01890) - 397721..398263 (-) 543 WP_302508675.1 LysR substrate-binding domain-containing protein -
  NYR19_RS01895 (NYR19_01895) - 398297..398731 (+) 435 Protein_351 amidophosphoribosyltransferase -
  NYR19_RS01900 (NYR19_01900) - 398731..399306 (+) 576 WP_021462090.1 UbiX family flavin prenyltransferase -
  NYR19_RS01905 (NYR19_01905) - 399670..400080 (+) 411 WP_302508676.1 DUF805 domain-containing protein -
  NYR19_RS01910 (NYR19_01910) - 400211..401278 (+) 1068 WP_021462088.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 105011.73 Da        Isoelectric Point: 6.5599

>NTDB_id=625919 NYR19_RS01880 WP_302508674.1 394133..396967(-) (uvrA) [Gallibacterium anatis strain TH22]
MDNIEIRGARTHNLKNINLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRCPTHNIPLTAQTISQMVDKILSLPEGSRMMLLAPVVKARKG
EHTKLLDNIAAQGYIRARIDGEICDLSDPPQLELQKKHTIEVIVDRFKIRPELSSRLAESLETALELSGGIVVVANMDDS
SAEELVFSANFACPHCGYSLPELEPRMFSFNNPAGACPTCDGLGIQQYFDEHRVVQNPSLSLAGGAIRGWDRRNFYYYQM
LTSLARHYHFDIEEPFEELPQKIQHLVLHGSGHEKIEFQYMNDRGDTIVRHHPFEGVLNNMARRYKETESMSVREDLAKY
ISTRPCQTCHGSRLKEEARHVFIGETTLPQISEMSIGEALHHFEQLQFEGQKAKIAEKILKEIKERLQFLVNVGLEYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRDLGNTVIVVEHDEDAIRTADHIIDI
GPGAGVHGGEVIAQGTAQQIMQDPNSLTGRFLSGKEKIDIPAARTPIKPEKILRLIGASGNNLKNVDLEIPVGLFTCITG
VSGSGKSTLINDTLFPIAQNALNRAENQQHAPFKAIEGLEFFDKVINIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREFF
DAVPMIARKLQTLIDVGLSYIRLGQASTTLSGGEAQRVKLASELSKRDTGNTLYILDEPTTGLHFADIKQLLEVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGNGGGEIIAKGTPEQVAEMTHSHTARFLKPILDKQK

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=625919 NYR19_RS01880 WP_302508674.1 394133..396967(-) (uvrA) [Gallibacterium anatis strain TH22]
ATGGACAATATCGAAATTCGGGGCGCAAGAACCCATAATTTAAAAAATATTAATTTAACCATTCCACGCAACAAATTGGT
GGTAATCACCGGTTTATCCGGCTCGGGAAAGTCTTCGTTAGCATTTGACACCCTCTATGCCGAAGGGCAACGGCGTTATG
TGGAATCACTTTCCGCTTATGCTCGCCAGTTTCTCTCTTTGATGGAAAAACCGGATGTGGATCATATCGAAGGTTTATCA
CCGGCGATCTCGATTGAACAGAAATCCACCTCACATAACCCTCGATCCACTGTCGGTACCATTACCGAAGTTTATGATTA
TTTAAGACTGCTGTTTGCTCGTGTCGGCGAACCACGTTGCCCGACACATAACATCCCATTAACGGCACAAACTATCAGTC
AAATGGTGGATAAAATTCTTTCTTTGCCGGAAGGCAGCCGAATGATGTTGCTTGCACCGGTGGTGAAAGCTCGCAAAGGC
GAGCACACCAAATTGTTGGATAACATTGCCGCACAAGGCTATATTCGCGCCAGAATTGACGGCGAAATCTGTGATCTCTC
CGATCCGCCACAACTGGAATTACAAAAGAAACACACCATTGAAGTGATTGTCGATCGCTTTAAAATCCGCCCTGAATTAT
CAAGCCGTTTAGCGGAATCATTGGAAACCGCACTGGAACTTTCCGGCGGTATTGTGGTGGTCGCCAATATGGATGACAGC
AGTGCCGAAGAGCTGGTTTTCTCTGCCAACTTTGCCTGTCCGCATTGCGGATATTCTTTGCCGGAACTAGAACCACGAAT
GTTCTCGTTTAATAATCCGGCAGGGGCTTGCCCTACTTGTGACGGCTTAGGCATTCAACAATATTTTGACGAACATCGTG
TGGTGCAAAACCCAAGTTTATCCCTTGCCGGCGGTGCAATTCGTGGTTGGGATCGCCGCAATTTCTATTATTACCAAATG
CTGACCTCGCTCGCGCGCCATTATCACTTTGATATTGAAGAGCCGTTTGAAGAATTACCACAAAAAATTCAACATTTGGT
GTTGCACGGTTCCGGTCACGAAAAAATTGAATTTCAATATATGAACGATCGTGGCGACACCATCGTGCGTCATCACCCAT
TTGAGGGCGTGTTGAACAATATGGCGCGCCGCTACAAAGAAACCGAGTCAATGTCGGTGCGTGAAGATTTGGCAAAATAT
ATCAGCACCCGTCCTTGCCAAACTTGCCACGGTTCTCGTCTAAAAGAAGAGGCTCGCCACGTCTTTATCGGCGAAACCAC
GTTGCCACAAATTTCTGAAATGAGTATCGGCGAAGCATTACACCATTTTGAACAATTACAGTTTGAAGGGCAAAAAGCCA
AAATTGCGGAAAAAATCTTAAAAGAGATTAAAGAACGGCTTCAGTTTTTAGTCAATGTCGGTCTGGAATATCTCTCTTTA
TCACGTTCCGCCGAAACACTCTCCGGCGGTGAAGCACAGCGTATTCGTCTTGCCAGCCAAATCGGTGCCGGCTTGGTCGG
CGTGATGTATGTGTTGGACGAACCTTCTATCGGCTTGCATCAACGTGATAATGAACGGTTGTTAAATACCTTGATTCACC
TAAGAGATTTAGGCAATACCGTGATTGTGGTTGAACACGACGAGGACGCGATTCGTACCGCCGACCACATCATCGATATT
GGGCCGGGAGCCGGCGTACACGGCGGTGAAGTGATTGCACAAGGCACAGCACAACAGATTATGCAAGATCCGAATTCGCT
TACCGGACGTTTTCTTTCCGGCAAAGAGAAAATCGACATTCCGGCAGCAAGAACACCGATCAAACCGGAAAAAATATTAC
GCCTGATCGGGGCGAGCGGTAACAATTTAAAAAATGTCGATTTAGAAATTCCGGTCGGTTTATTCACCTGTATCACCGGC
GTTTCCGGCTCAGGGAAATCGACCTTAATTAACGATACCTTATTCCCAATCGCACAAAATGCGCTTAACCGCGCTGAAAA
TCAGCAACACGCACCGTTTAAAGCCATCGAAGGATTAGAGTTTTTCGACAAAGTGATCAATATCGATCAAAGCCCAATCG
GACGCACACCAAGATCCAATCCGGCAACTTATACCGGTGTATTCACGCCTATTCGTGAGCTATTCGCCGGCGTACCGGAA
GCGCGCGCAAGAGGATATAATCCGGGACGCTTCAGTTTTAATGTGCGTGGCGGTCGTTGTGAAGCCTGCCAAGGGGACGG
TGTGATTAAAGTCGAAATGCACTTTCTGCCGGATATTTATGTGCCGTGCGATCAATGTAAGGGCAAACGCTACAATCGCG
AAACATTGGAAATCCGTTATAAAGGCAAAACCATTCATCAAGTGTTGGAAATGACGGTCGAAGAGGCACGTGAATTTTTT
GATGCCGTGCCAATGATCGCGCGCAAATTACAAACCTTAATTGATGTCGGCTTGTCTTACATCCGTCTTGGTCAGGCTTC
CACCACCTTGTCGGGCGGCGAAGCACAACGGGTTAAACTGGCATCGGAATTGTCTAAACGTGATACCGGAAACACACTCT
ATATTCTTGATGAACCGACAACCGGATTACATTTCGCCGACATCAAACAATTATTGGAAGTGCTGCATCGCTTACGTGAT
CAAGGCAACACCATTGTTGTGATTGAACACAATCTGGATGTGATTAAAACTGCCGATTGGATTGTCGATTTAGGGCCGGA
GGGTGGCAATGGAGGTGGTGAGATCATTGCAAAAGGCACACCAGAACAGGTCGCGGAAATGACACATTCTCACACAGCAA
GGTTTTTAAAACCGATTTTGGATAAACAAAAATAG

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.553

99.576

0.573
  uvrA Streptococcus pneumoniae TIGR4

57.553

99.576

0.573
  uvrA Streptococcus pneumoniae D39

57.553

99.576

0.573