Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NYR19_RS00550 Genome accession   NZ_CP103874
Coordinates   122606..123853 (+) Length   415 a.a.
NCBI ID   WP_302508588.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117606..128853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS00520 (NYR19_00520) - 117615..118967 (-) 1353 WP_013745980.1 PTS ascorbate transporter subunit IIC -
  NYR19_RS00525 (NYR19_00525) - 118986..119258 (-) 273 WP_039149746.1 PTS sugar transporter subunit IIB -
  NYR19_RS00530 (NYR19_00530) - 119279..119716 (-) 438 WP_039084585.1 PTS sugar transporter subunit IIA -
  NYR19_RS00535 (NYR19_00535) - 119875..120897 (+) 1023 WP_302508585.1 LacI family DNA-binding transcriptional regulator -
  NYR19_RS00540 (NYR19_00540) - 120894..121883 (-) 990 WP_302508586.1 acryloyl-CoA reductase -
  NYR19_RS00545 (NYR19_00545) rsmD 121887..122480 (-) 594 WP_302508587.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NYR19_RS00550 (NYR19_00550) pilA 122606..123853 (+) 1248 WP_302508588.1 signal recognition particle-docking protein FtsY Machinery gene
  NYR19_RS00555 (NYR19_00555) ftsE 123863..124528 (+) 666 WP_018345464.1 cell division ATP-binding protein FtsE -
  NYR19_RS00560 (NYR19_00560) ftsX 124539..125474 (+) 936 WP_039095000.1 permease-like cell division protein FtsX -
  NYR19_RS00565 (NYR19_00565) corA 125745..126692 (+) 948 WP_013745989.1 magnesium/cobalt transporter CorA -
  NYR19_RS00570 (NYR19_00570) napF 126723..127250 (-) 528 WP_302509342.1 ferredoxin-type protein NapF -
  NYR19_RS00575 (NYR19_00575) dmsD 127257..127865 (-) 609 WP_052115739.1 Tat proofreading chaperone DmsD -
  NYR19_RS00580 (NYR19_00580) - 127923..128744 (-) 822 WP_302508592.1 DmsC/YnfH family molybdoenzyme membrane anchor subunit -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45863.96 Da        Isoelectric Point: 4.8342

>NTDB_id=625912 NYR19_RS00550 WP_302508588.1 122606..123853(+) (pilA) [Gallibacterium anatis strain TH22]
MSENKQKKGFWASLFGRNKSQQPQQNTQQETKADADNVISDQHPQTEAHKTETPITESQLTDTEIATTEQQEQQNSSLPP
QQIEPEPEPEPEPEPEPTKIETQEKPTKQGFFSRLVQGLVKTKQNIGAGFRSLFSGKKIDDDLFEELEEQLLIADIGVPT
TNKIIKNLTEHASRKQLKEAELLYQQLKVELATILKPNEQPLVLTDKKPFVILMVGVNGVGKTTTIGKLAKQFQQQGKSV
MLAAGDTFRAAAVEQLQVWGERNHIPVIAQATGADSASVLFDAMQSATAKGVDILIADTAGRLQNKNNLMDELRKIVRVM
KKYDESAPHEIMLTLDAGTGQNAISQMKLFNEAVGITGITLTKLDGTAKGGVIFALADQFNVPIRYIGVGEKIDDLRPFN
SEEFIEALFTSDKEV

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=625912 NYR19_RS00550 WP_302508588.1 122606..123853(+) (pilA) [Gallibacterium anatis strain TH22]
ATGTCGGAAAATAAACAGAAAAAAGGCTTTTGGGCATCATTATTCGGTCGTAATAAATCTCAACAACCGCAACAAAATAC
ACAACAGGAAACAAAAGCTGATGCAGATAATGTTATTTCAGATCAGCATCCACAAACTGAAGCTCATAAAACTGAAACAC
CGATTACTGAATCACAACTTACCGACACAGAAATAGCAACAACAGAACAGCAAGAACAACAAAATTCTTCACTTCCACCA
CAGCAAATCGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTACAAAAATTGAAACACAGGAAAAACCTAC
TAAACAAGGTTTTTTCAGCCGTTTAGTACAAGGACTGGTGAAAACCAAACAAAATATCGGTGCCGGTTTTCGCTCTCTTT
TTTCAGGTAAAAAAATTGATGATGATCTGTTTGAAGAGTTAGAAGAACAGCTGTTAATTGCGGATATCGGTGTGCCGACC
ACAAATAAAATTATTAAAAATTTAACAGAACACGCCAGCCGTAAGCAGTTAAAAGAGGCGGAATTACTCTATCAACAATT
AAAAGTTGAATTAGCAACTATTTTAAAGCCGAATGAACAACCTTTAGTGCTAACCGATAAAAAACCTTTTGTTATTTTGA
TGGTTGGCGTAAACGGTGTCGGTAAAACCACTACCATTGGTAAATTAGCAAAACAGTTCCAACAGCAAGGTAAATCCGTT
ATGTTAGCTGCCGGTGATACCTTCCGTGCGGCGGCGGTAGAACAGTTACAAGTTTGGGGTGAGAGGAATCATATTCCTGT
TATCGCTCAAGCAACCGGCGCAGATTCCGCTTCAGTATTATTTGATGCAATGCAATCTGCAACTGCAAAAGGGGTGGATA
TTCTGATTGCCGACACCGCCGGTCGTTTGCAAAATAAGAATAATTTGATGGATGAACTAAGAAAAATCGTGCGTGTAATG
AAAAAATATGATGAAAGTGCACCGCACGAAATTATGTTGACATTGGATGCCGGCACCGGTCAAAACGCGATTAGCCAGAT
GAAATTATTTAATGAAGCAGTCGGTATCACAGGAATTACATTAACCAAATTGGACGGCACAGCAAAAGGCGGTGTCATTT
TTGCACTGGCAGATCAATTTAATGTACCTATTCGTTATATCGGCGTGGGTGAAAAAATTGATGATTTACGCCCATTTAAT
AGCGAAGAGTTTATTGAAGCACTGTTTACATCGGATAAAGAGGTTTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(126-191)

SRP54-type protein, GTPase domain (SRP54)

(209-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.125

73.012

0.395