Detailed information NTG0062590

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VIBNI_RS17185
• Genome accession: NC_022528
• Coordinates: 3802604..3803608 (+)
• Length: 334 a.a.
• NCBI ID: WP_004405365.1
• Uniprot ID: A0AAV2VU79
• Organism: Vibrio nigripulchritudo
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3797604..3808608

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIBNI_RS17165 (VIBNI_A3601)	metJ	3797674..3797994 (+)	321	WP_004405361.1	met regulon transcriptional regulator MetJ	-
VIBNI_RS17170 (VIBNI_A3602)	-	3798098..3799357 (-)	1260	WP_022551982.1	malic enzyme-like NAD(P)-binding protein	-
VIBNI_RS17175 (VIBNI_A3603)	rpmE	3799627..3799845 (-)	219	WP_004405363.1	50S ribosomal protein L31	-
VIBNI_RS17180 (VIBNI_A3604)	priA	3800149..3802350 (+)	2202	WP_022551983.1	primosomal protein N'	-
VIBNI_RS17185 (VIBNI_A3605)	cytR	3802604..3803608 (+)	1005	WP_004405365.1	DNA-binding transcriptional regulator CytR	Regulator
VIBNI_RS17190 (VIBNI_A3606)	-	3803735..3804271 (+)	537	WP_022551984.1	SPOR domain-containing protein	-
VIBNI_RS17195 (VIBNI_A3607)	hslV	3804657..3805196 (+)	540	WP_022551985.1	ATP-dependent protease subunit HslV	-
VIBNI_RS17200 (VIBNI_A3608)	hslU	3805207..3806538 (+)	1332	WP_022551986.1	HslU--HslV peptidase ATPase subunit	-
VIBNI_RS17205 (VIBNI_A3609)	-	3806665..3807582 (+)	918	WP_022551987.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VIBNI_RS17210 (VIBNI_A3610)	rraA	3807661..3808191 (+)	531	WP_004405373.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36408.85 Da
• Isoelectric Point: 6.0502

>NTDB_id=62590 VIBNI_RS17185 WP_004405365.1 3802604..3803608(+) (cytR) [Vibrio nigripulchritudo]
MATMKDVAQLAGVSTATVSRALMNPEKVSSTTRKRVESAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDSYFTEIIRG
IEDVAVENGYLVLLGDSGQQKKRESSLVNLVFTKQADGMLLLGTHLPFDVSKPEQKNLPPLVMACEFAPELELPTVHIDN
LTSSFEAVNYLTQMGHSKIAQISGPDDAALCQFRNQGYQQALRRAGITMNPTYKEMGDFTFESGQKAIAKLLALPEPPTA
VFCHNDAMAIGAIKGAKAAGLKVPQDLSVVGFDDIQFAEFCDPPLTTITQPRYEIGRQAMLMLLEILKGRDVHAGSRLLE
TELKIRDSAAPPRS

Nucleotide

• Length: 1005 bp

>NTDB_id=62590 VIBNI_RS17185 WP_004405365.1 3802604..3803608(+) (cytR) [Vibrio nigripulchritudo]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGAGTTTCAACTGCAACGGTATCGAGGGCTTTGATGAATCCTGAGAA
GGTTTCGTCGACGACACGTAAACGTGTGGAAAGCGCCGTTTTGGAAGCTGGTTATTCGCCGAATTCACTGGCAAGAAACT
TACGACGTAATGAATCCAAAACTATCGTTGCAATCGTCCCTGACATTTGCGACTCCTACTTTACAGAGATCATTCGCGGC
ATTGAGGATGTGGCCGTGGAAAACGGGTATCTCGTATTGTTAGGAGACAGCGGTCAGCAGAAGAAACGAGAGAGCTCACT
GGTCAACCTGGTCTTTACCAAACAAGCAGACGGCATGTTGTTATTGGGGACACACCTGCCGTTTGATGTCAGCAAACCGG
AACAGAAGAACTTGCCACCACTGGTCATGGCTTGTGAATTCGCACCGGAACTGGAATTGCCGACAGTGCACATTGATAAC
CTAACGTCTTCGTTCGAAGCGGTGAACTACCTCACCCAAATGGGTCATTCGAAGATTGCTCAGATTTCAGGACCTGACGA
TGCAGCATTGTGTCAGTTCCGTAACCAAGGTTATCAGCAGGCTTTACGTCGCGCTGGCATCACCATGAATCCAACCTATA
AGGAAATGGGCGATTTCACCTTTGAATCAGGGCAAAAGGCAATCGCAAAACTTCTGGCACTTCCGGAACCACCAACTGCC
GTTTTCTGCCACAATGACGCCATGGCAATCGGCGCTATTAAGGGAGCAAAAGCGGCTGGATTGAAAGTACCTCAAGACCT
GTCTGTTGTCGGGTTTGATGATATTCAGTTCGCGGAGTTCTGTGATCCACCATTGACGACTATTACCCAACCTCGCTATG
AGATTGGTCGTCAGGCAATGCTGATGCTGCTTGAGATACTCAAAGGCAGAGATGTACATGCCGGATCACGTCTACTGGAA
ACAGAACTGAAAATCCGAGACAGCGCAGCGCCTCCAAGAAGCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	85.843	99.401	0.853
cytR	Vibrio parahaemolyticus RIMD 2210633	83.483	99.701	0.832