Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB4   Type   Machinery gene
Locus tag   DO80_RS08410 Genome accession   NZ_AP019730
Coordinates   799497..800636 (-) Length   379 a.a.
NCBI ID   WP_373454281.1    Uniprot ID   -
Organism   Helicobacter pylori strain TN2wt     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 794497..805636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DO80_RS04055 (DO80_07810) - 794635..796362 (-) 1728 WP_172620356.1 type IV secretory system conjugative DNA transfer family protein -
  DO80_RS04060 (DO80_07820) - 796363..796920 (-) 558 WP_108303928.1 hypothetical protein -
  DO80_RS04065 (DO80_07830) - 796921..797211 (-) 291 WP_096396223.1 hypothetical protein -
  DO80_RS04070 - 797208..797312 (-) 105 Protein_767 mobilization protein -
  DO80_RS04075 - 797303..798270 (-) 968 Protein_768 type VI secretion protein -
  DO80_RS04080 (DO80_07860) - 798267..799373 (-) 1107 WP_108303929.1 VirB8/TrbF family protein -
  DO80_RS08195 - 799366..799500 (-) 135 WP_033582542.1 hypothetical protein -
  DO80_RS08410 (DO80_07870) comB4 799497..800636 (-) 1140 WP_373454281.1 cell division protein FtsK Machinery gene
  DO80_RS08415 (DO80_07880) comB4 800691..801242 (-) 552 WP_373454282.1 hypothetical protein Machinery gene
  DO80_RS08420 - 801164..801451 (-) 288 WP_373367128.1 hypothetical protein -
  DO80_RS08425 (DO80_07890) comB4 801610..802083 (-) 474 WP_373367129.1 hypothetical protein Machinery gene
  DO80_RS04095 (DO80_07900) - 802083..802319 (-) 237 WP_001186276.1 hypothetical protein -
  DO80_RS04100 (DO80_07910) comB3 802330..802593 (-) 264 WP_096468242.1 competence protein ComB Machinery gene
  DO80_RS04105 (DO80_07920) comB2 802604..802888 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  DO80_RS04110 (DO80_07930) - 802885..803364 (-) 480 WP_172417642.1 hypothetical protein -
  DO80_RS04115 (DO80_07940) - 803468..804256 (-) 789 WP_108303930.1 integrase -
  DO80_RS04120 (DO80_07950) hopE 804421..805242 (+) 822 WP_000395364.1 Hop family outer membrane protein HopE -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 43707.61 Da        Isoelectric Point: 6.0548

>NTDB_id=62589 DO80_RS08410 WP_373454281.1 799497..800636(-) (comB4) [Helicobacter pylori strain TN2wt]
MIIGATGAGKTTLISYLMMSTLKYPNIDILALDRLNGLYSFTKYFDGIYNEGESFHINPFSLEDSASNRAFLLHFYAQMA
KVDSYDKHNDKIEDRTALLNAIDTMYRNYNDEVKQAKFNNQELPLPFDLKEFVNSIVKTNTNILDSSFEDYLKSSLFSSR
MDSLDFKTRISTINTDSILHNDDDAGLLAYYVFHKMIDRALRINRGFLCFIDEFKSYAQNEMMNKKINEIITQARKANGV
IVLALQDINQLSEVRNAQSFIKNMGQLILYPQRNIDTKDLNDKFGIRLSDTEKHFLENTAVNEYKVLLKNMNDGSSNIID
VSLSSLGNYLQIFSSNSSMVEHIENLIKHYPTTWKEVFVNNTYQKFDDKKHLEKVLCPT

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=62589 DO80_RS08410 WP_373454281.1 799497..800636(-) (comB4) [Helicobacter pylori strain TN2wt]
ATGATTATTGGCGCAACAGGAGCTGGTAAAACCACGCTCATTAGCTATTTGATGATGAGCACTTTAAAATACCCTAACAT
TGACATTCTAGCTCTTGATAGATTAAATGGCTTGTATTCTTTTACCAAGTATTTTGATGGGATTTATAATGAAGGCGAAA
GCTTTCATATCAATCCTTTTTCATTAGAAGATAGCGCAAGTAACAGAGCCTTTTTATTGCATTTTTATGCCCAAATGGCA
AAAGTAGATAGCTATGACAAACATAATGATAAGATAGAAGATAGAACAGCCCTTTTAAACGCTATTGATACCATGTATAG
AAATTATAACGATGAAGTCAAACAAGCCAAATTCAACAACCAAGAATTACCACTCCCTTTTGATTTAAAAGAGTTTGTCA
ATTCCATTGTTAAAACCAATACAAACATTTTAGATAGCAGTTTTGAAGACTATTTAAAATCTTCCTTATTTTCTAGCCGA
ATGGATAGCCTAGATTTTAAAACTCGTATTAGCACCATAAATACTGATAGCATTTTACATAATGATGATGACGCTGGGCT
TTTAGCTTATTATGTGTTTCATAAGATGATTGATAGAGCCTTGAGAATCAATCGTGGGTTTTTGTGTTTTATTGATGAGT
TTAAATCTTACGCTCAAAATGAAATGATGAATAAAAAAATCAATGAAATCATCACGCAAGCTAGAAAGGCTAATGGGGTG
ATTGTTTTAGCCTTACAAGATATTAACCAGCTTAGTGAAGTGAGAAACGCTCAAAGCTTTATTAAAAATATGGGGCAATT
AATTTTGTATCCCCAAAGAAATATTGATACCAAAGATTTAAACGATAAATTTGGCATTAGACTAAGCGATACAGAAAAAC
ATTTTTTAGAAAACACCGCCGTTAATGAATACAAGGTCTTACTCAAAAACATGAATGATGGCTCATCTAACATTATAGAT
GTGAGCCTTAGCTCTTTGGGTAATTACTTACAAATCTTTAGCTCCAATTCTAGCATGGTAGAACATATTGAAAATCTTAT
TAAACACTACCCTACTACTTGGAAAGAAGTCTTTGTCAATAACACCTATCAAAAATTTGATGACAAAAAACACTTAGAAA
AGGTGCTTTGCCCAACATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB4 Helicobacter pylori 26695

49.58

94.195

0.467

Multiple sequence alignment