Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   VIBNI_RS17070 Genome accession   NC_022528
Coordinates   3771232..3771744 (-) Length   170 a.a.
NCBI ID   WP_004405327.1    Uniprot ID   A0AAV2VIE1
Organism   Vibrio nigripulchritudo     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3766232..3776744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS17055 (VIBNI_A3579) aroB 3767646..3768734 (-) 1089 WP_004405321.1 3-dehydroquinate synthase -
  VIBNI_RS17060 (VIBNI_A3580) aroK 3768757..3769275 (-) 519 WP_004405322.1 shikimate kinase AroK -
  VIBNI_RS17065 (VIBNI_A3581) pilQ 3769465..3771195 (-) 1731 WP_022551972.1 type IV pilus secretin PilQ family protein Machinery gene
  VIBNI_RS17070 (VIBNI_A3582) pilP 3771232..3771744 (-) 513 WP_004405327.1 pilus assembly protein PilP Machinery gene
  VIBNI_RS17075 (VIBNI_A3583) pilO 3771737..3772324 (-) 588 WP_004405328.1 type 4a pilus biogenesis protein PilO Machinery gene
  VIBNI_RS17080 (VIBNI_A3584) pilN 3772321..3772881 (-) 561 WP_004405329.1 PilN domain-containing protein Machinery gene
  VIBNI_RS17085 (VIBNI_A3585) pilM 3772874..3773890 (-) 1017 WP_004405331.1 type IV pilus assembly protein PilM Machinery gene
  VIBNI_RS17090 (VIBNI_A3586) - 3774036..3776534 (+) 2499 WP_022551973.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18571.82 Da        Isoelectric Point: 10.9516

>NTDB_id=62586 VIBNI_RS17070 WP_004405327.1 3771232..3771744(-) (pilP) [Vibrio nigripulchritudo]
MNKALLGIMVVVALSGCRANQEPLQDFILKTQQSASTQVSKLQAEQTFKASEFNPLATRAPFALPKIAVVQTQPSLVKDC
WQPSSRRKNGKLERFALTQLQLKGVMGSGNSVSGIIQVPTGQVVKVKKGHYLGLNNGKIIKITPKHLTIQETLPDGLGCW
QQRNVKLALK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=62586 VIBNI_RS17070 WP_004405327.1 3771232..3771744(-) (pilP) [Vibrio nigripulchritudo]
ATGAATAAAGCACTATTGGGAATCATGGTAGTGGTGGCTTTATCCGGATGTCGCGCCAATCAGGAGCCGCTGCAGGATTT
CATCTTAAAAACGCAGCAAAGTGCCTCGACACAAGTATCAAAGCTGCAGGCAGAACAAACTTTTAAGGCCAGTGAGTTCA
ATCCGTTGGCGACACGAGCACCGTTTGCGTTGCCTAAGATTGCGGTCGTTCAAACTCAGCCTTCGCTGGTTAAAGATTGC
TGGCAGCCCTCTTCACGACGCAAAAATGGCAAGCTGGAACGCTTTGCTCTCACTCAGCTTCAACTGAAAGGCGTAATGGG
AAGTGGGAACTCTGTTTCGGGCATCATCCAGGTGCCTACCGGTCAGGTCGTCAAAGTGAAGAAAGGACACTACCTCGGGC
TGAACAACGGCAAGATCATCAAGATAACACCTAAGCATCTCACCATTCAGGAAACCTTGCCTGATGGGTTGGGGTGCTGG
CAGCAGCGTAACGTTAAGCTCGCGTTGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

55.03

99.412

0.547
  pilP Vibrio cholerae strain A1552

52.353

100

0.524

Multiple sequence alignment