Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NYR13_RS11545 Genome accession   NZ_CP103860
Coordinates   2257773..2258855 (-) Length   360 a.a.
NCBI ID   WP_001548033.1    Uniprot ID   A0A0H2XJ41
Organism   Staphylococcus aureus strain R3-8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2252773..2263855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR13_RS11525 (NYR13_11525) - 2253382..2253486 (-) 105 WP_001790092.1 hypothetical protein -
  NYR13_RS11530 (NYR13_11530) secA 2253528..2256059 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NYR13_RS11535 (NYR13_11535) hpf 2256473..2257045 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NYR13_RS11540 (NYR13_11540) - 2257106..2257780 (-) 675 WP_001057965.1 ComF family protein -
  NYR13_RS11545 (NYR13_11545) comFA 2257773..2258855 (-) 1083 WP_001548033.1 DEAD/DEAH box helicase Machinery gene
  NYR13_RS11550 (NYR13_11550) fakB1 2259219..2260085 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  NYR13_RS11555 (NYR13_11555) - 2260229..2260870 (+) 642 WP_000192947.1 YigZ family protein -
  NYR13_RS11560 (NYR13_11560) - 2261040..2262095 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  NYR13_RS11565 (NYR13_11565) - 2262413..2263483 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42111.65 Da        Isoelectric Point: 9.8307

>NTDB_id=625817 NYR13_RS11545 WP_001548033.1 2257773..2258855(-) (comFA) [Staphylococcus aureus strain R3-8]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=625817 NYR13_RS11545 WP_001548033.1 2257773..2258855(-) (comFA) [Staphylococcus aureus strain R3-8]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XJ41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367