Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYR13_RS07935 Genome accession   NZ_CP103860
Coordinates   1524420..1525046 (-) Length   208 a.a.
NCBI ID   WP_001108889.1    Uniprot ID   Q7B2U9
Organism   Staphylococcus aureus strain R3-8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1519420..1530046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR13_RS07915 (NYR13_07915) - 1519993..1520679 (+) 687 WP_000362212.1 DnaD domain-containing protein -
  NYR13_RS07920 (NYR13_07920) nth 1520669..1521328 (+) 660 WP_000253765.1 endonuclease III -
  NYR13_RS07925 (NYR13_07925) - 1521333..1521674 (+) 342 WP_000182019.1 YpoC family protein -
  NYR13_RS07930 (NYR13_07930) - 1522240..1524423 (-) 2184 WP_000138351.1 transglycosylase domain-containing protein -
  NYR13_RS07935 (NYR13_07935) recU 1524420..1525046 (-) 627 WP_001108889.1 Holliday junction resolvase RecU Machinery gene
  NYR13_RS07940 (NYR13_07940) - 1525352..1525531 (+) 180 WP_001788819.1 hypothetical protein -
  NYR13_RS07945 (NYR13_07945) - 1525586..1525936 (+) 351 WP_001000800.1 YppE family protein -
  NYR13_RS07950 (NYR13_07950) - 1525929..1526492 (+) 564 WP_000241308.1 DUF1273 domain-containing protein -
  NYR13_RS07955 (NYR13_07955) gpsB 1526506..1526850 (+) 345 WP_001286320.1 cell division regulator GpsB -
  NYR13_RS07965 (NYR13_07965) - 1527501..1528646 (+) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  NYR13_RS07970 (NYR13_07970) - 1528730..1529062 (+) 333 WP_000516800.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24443.81 Da        Isoelectric Point: 9.7084

>NTDB_id=625788 NYR13_RS07935 WP_001108889.1 1524420..1525046(-) (recU) [Staphylococcus aureus strain R3-8]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=625788 NYR13_RS07935 WP_001108889.1 1524420..1525046(-) (recU) [Staphylococcus aureus strain R3-8]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7B2U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529