Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LN355_RS16265 Genome accession   NZ_CP086618
Coordinates   3301398..3302027 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RIVM_C039227     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3296398..3307027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN355_RS16250 (LN355_16255) helD 3296640..3298694 (-) 2055 WP_001550921.1 DNA helicase IV -
  LN355_RS16255 (LN355_16260) yccF 3298817..3299263 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LN355_RS16260 (LN355_16265) yccS 3299273..3301435 (+) 2163 WP_001550920.1 YccS family putative transporter -
  LN355_RS16265 (LN355_16270) sxy/tfoX 3301398..3302027 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LN355_RS16270 (LN355_16275) sulA 3302246..3302755 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  LN355_RS16275 (LN355_16280) ompA 3303112..3304164 (+) 1053 WP_000750418.1 porin OmpA -
  LN355_RS16280 (LN355_16285) matP 3304239..3304691 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LN355_RS16285 (LN355_16290) ycbZ 3304877..3306637 (+) 1761 WP_000156479.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=625764 LN355_RS16265 WP_000839153.1 3301398..3302027(-) (sxy/tfoX) [Escherichia coli strain RIVM_C039227]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=625764 LN355_RS16265 WP_000839153.1 3301398..3302027(-) (sxy/tfoX) [Escherichia coli strain RIVM_C039227]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1