Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LN353_RS15930 Genome accession   NZ_CP086616
Coordinates   3258202..3258831 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RIVM_C039629     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3253202..3263831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN353_RS15915 (LN353_15920) helD 3253444..3255498 (-) 2055 WP_001550921.1 DNA helicase IV -
  LN353_RS15920 (LN353_15925) yccF 3255621..3256067 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LN353_RS15925 (LN353_15930) yccS 3256077..3258239 (+) 2163 WP_001550920.1 YccS family putative transporter -
  LN353_RS15930 (LN353_15935) sxy/tfoX 3258202..3258831 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LN353_RS15935 (LN353_15940) sulA 3259050..3259559 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  LN353_RS15940 (LN353_15945) ompA 3259916..3260968 (+) 1053 WP_000750418.1 porin OmpA -
  LN353_RS15945 (LN353_15950) matP 3261043..3261495 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LN353_RS15950 (LN353_15955) ycbZ 3261681..3263441 (+) 1761 WP_000156479.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=625742 LN353_RS15930 WP_000839153.1 3258202..3258831(-) (sxy/tfoX) [Escherichia coli strain RIVM_C039629]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=625742 LN353_RS15930 WP_000839153.1 3258202..3258831(-) (sxy/tfoX) [Escherichia coli strain RIVM_C039629]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1