Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NY025_RS22080 Genome accession   NZ_CP103852
Coordinates   3070256..3070624 (-) Length   122 a.a.
NCBI ID   WP_003261832.1    Uniprot ID   A0ABF7RF33
Organism   Ralstonia pseudosolanacearum strain LMG 9673     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3065256..3075624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY025_RS22070 (NY025_22070) - 3067172..3069403 (-) 2232 WP_193026388.1 methyl-accepting chemotaxis protein -
  NY025_RS22075 (NY025_22075) - 3069652..3070197 (-) 546 WP_193026389.1 chemotaxis protein CheW -
  NY025_RS22080 (NY025_22080) pilH 3070256..3070624 (-) 369 WP_003261832.1 response regulator Machinery gene
  NY025_RS22085 (NY025_22085) pilG 3070656..3071123 (-) 468 WP_016723446.1 response regulator Regulator
  NY025_RS22090 (NY025_22090) - 3071424..3071606 (-) 183 WP_003261842.1 rubredoxin -
  NY025_RS22095 (NY025_22095) hemL 3071827..3073119 (+) 1293 WP_193028543.1 glutamate-1-semialdehyde 2,1-aminomutase -
  NY025_RS22100 (NY025_22100) - 3073223..3073474 (-) 252 Protein_2793 dihydrodipicolinate synthase family protein -
  NY025_RS22105 (NY025_22105) - 3073584..3074210 (+) 627 WP_193026390.1 LemA family protein -
  NY025_RS22110 (NY025_22110) - 3074223..3075101 (+) 879 WP_193026391.1 YgcG family protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13468.71 Da        Isoelectric Point: 4.9222

>NTDB_id=625726 NY025_RS22080 WP_003261832.1 3070256..3070624(-) (pilH) [Ralstonia pseudosolanacearum strain LMG 9673]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEDLLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=625726 NY025_RS22080 WP_003261832.1 3070256..3070624(-) (pilH) [Ralstonia pseudosolanacearum strain LMG 9673]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTTAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGATCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABF7RF33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.068

96.721

0.426