Detailed information NTG0062571

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: VIBNI_RS06790
• Genome accession: NC_022528
• Coordinates: 1511384..1512808 (-)
• Length: 474 a.a.
• NCBI ID: WP_022550472.1
• Uniprot ID: U4K4N5
• Organism: Vibrio nigripulchritudo
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1506384..1517808

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIBNI_RS06765 (VIBNI_A1413)	-	1507213..1507854 (+)	642	WP_022550467.1	thiopurine S-methyltransferase	-
VIBNI_RS06770 (VIBNI_A1414)	purT	1507904..1509079 (-)	1176	WP_022550468.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
VIBNI_RS06775 (VIBNI_A1415)	cdd	1509228..1510115 (-)	888	WP_022550469.1	cytidine deaminase	-
VIBNI_RS06780 (VIBNI_A1416)	-	1510337..1511011 (-)	675	WP_022550470.1	LrgB family protein	-
VIBNI_RS06785 (VIBNI_A1417)	-	1511011..1511373 (-)	363	WP_022550471.1	CidA/LrgA family protein	-
VIBNI_RS06790 (VIBNI_A1418)	sbcB	1511384..1512808 (-)	1425	WP_022550472.1	exodeoxyribonuclease I	Machinery gene
VIBNI_RS06795 (VIBNI_A1420)	-	1513266..1513979 (+)	714	WP_022550473.1	TetR family transcriptional regulator	-
VIBNI_RS06800 (VIBNI_A1421)	-	1513985..1515259 (+)	1275	WP_022550474.1	AarF/ABC1/UbiB kinase family protein	-
VIBNI_RS06805 (VIBNI_A1422)	-	1515271..1515651 (+)	381	WP_022550475.1	hypothetical protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54413.72 Da
• Isoelectric Point: 5.0843

>NTDB_id=62571 VIBNI_RS06790 WP_022550472.1 1511384..1512808(-) (sbcB) [Vibrio nigripulchritudo]
MSKENQPTLFFFDYETWGTSPAKDRPSQFAGVRTDMDLNIIGEPLVIYCQPPSDYLPSPEAALITGISPQTAVSKGLPEP
EFIKKIHDELSTPNTTSLGYNSIRFDDEVSRYTLYRNFYDPYAWSWQHGNSRWDLLDVMRACHALRPEGVNWPQRDDGYT
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKEAQPKLFDYLFSMRHKKKLNELVDIVNMTPLMHVSGMLGAECSY
TSWMVPVAWHPTNQNAVVMVNLAMDPSPLIELDSAQLKERLYTRRDQLSEGELPVPIKLVHLNKCPVLAPAKTLSAENAE
TIGIDREQCLKNLAVIRQHPEIREKLIELYQNQNEYDVDPDVDTQLYNGFFSPADKTAMEIIREKSPEQLAGLDLNVKDA
RIAPLLFRYRARHYPWTLDETEQAKWAAHCREYFESNLPEYMQNLENLVHEHDGDEKKIALLKSVYHYVEKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=62571 VIBNI_RS06790 WP_022550472.1 1511384..1512808(-) (sbcB) [Vibrio nigripulchritudo]
ATGTCAAAAGAAAACCAGCCGACTCTGTTCTTTTTCGATTACGAAACCTGGGGGACCAGCCCCGCTAAAGATCGACCTAG
CCAGTTTGCCGGAGTTCGCACAGACATGGATTTGAATATCATAGGTGAACCGCTTGTCATTTATTGCCAGCCTCCCTCTG
ATTACCTCCCTTCACCTGAAGCCGCGCTTATTACTGGAATCTCTCCACAAACAGCTGTAAGTAAAGGACTACCAGAGCCT
GAGTTCATTAAAAAGATTCACGACGAACTTTCTACGCCAAATACCACAAGCCTCGGTTACAACAGTATTCGATTTGATGA
CGAAGTCTCTCGCTACACTCTTTATCGAAACTTTTATGACCCGTATGCCTGGAGCTGGCAGCACGGAAACTCTCGATGGG
ATTTGCTGGACGTAATGCGTGCCTGTCACGCACTTCGACCTGAGGGAGTAAACTGGCCTCAACGTGATGATGGCTATACA
AGCTTTAAGCTAGAGCACCTTTCTGTTGCCAATGGTATCGAGCACGAAAATGCACACGATGCGATGGCAGATGTAATTGC
GACCATCGAAATGGCTAAGAAGGTTAAGGAAGCACAGCCAAAGCTGTTCGATTACCTATTTAGTATGCGCCACAAAAAGA
AACTCAATGAGCTTGTCGATATCGTCAACATGACACCTTTGATGCATGTCTCTGGTATGTTGGGTGCAGAATGCTCCTAC
ACTTCGTGGATGGTTCCTGTCGCGTGGCACCCAACCAATCAAAATGCTGTCGTCATGGTCAATCTTGCCATGGACCCAAG
CCCGCTTATTGAGCTGGATTCCGCACAGCTGAAAGAACGTCTCTATACTAGAAGAGATCAGCTTTCTGAAGGGGAACTTC
CAGTACCGATAAAACTCGTTCACCTGAACAAATGCCCTGTCCTCGCACCTGCAAAAACATTATCTGCGGAAAACGCAGAA
ACGATAGGTATTGATCGCGAGCAGTGCTTAAAAAACCTTGCCGTAATTCGTCAACACCCAGAAATTAGGGAAAAGCTTAT
TGAGCTTTACCAGAATCAAAACGAGTATGATGTAGACCCAGATGTCGACACTCAGCTCTATAACGGATTCTTCTCTCCGG
CAGACAAGACAGCCATGGAGATCATTAGAGAGAAATCACCTGAACAACTCGCAGGCTTGGATTTGAATGTAAAAGATGCA
CGAATCGCACCTCTGCTTTTCCGCTATCGTGCTCGTCACTATCCATGGACTTTGGACGAAACGGAACAAGCGAAATGGGC
AGCACATTGTCGTGAGTATTTTGAAAGCAACTTACCGGAATACATGCAGAATCTGGAAAACTTAGTTCACGAACATGACG
GTGACGAGAAAAAGATTGCCTTGCTAAAATCCGTATACCATTACGTTGAAAAATTGGTCTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

3D structure

• AlphaFold DB: U4K4N5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.899	99.789	0.757