Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DO80_RS03250 Genome accession   NZ_AP019730
Coordinates   617924..619444 (+) Length   506 a.a.
NCBI ID   WP_108303632.1    Uniprot ID   -
Organism   Helicobacter pylori strain TN2wt     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 612924..624444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DO80_RS03220 (DO80_06090) moaC 613071..613552 (+) 482 Protein_605 cyclic pyranopterin monophosphate synthase MoaC -
  DO80_RS03225 (DO80_06100) hpaA 613671..614453 (+) 783 WP_108303636.1 flagellar sheath lipoprotein HpaA -
  DO80_RS03230 (DO80_06110) - 614476..615312 (+) 837 WP_108303635.1 outer membrane protein -
  DO80_RS03235 (DO80_06120) tig 615425..616780 (+) 1356 WP_108303634.1 trigger factor -
  DO80_RS03240 (DO80_06130) clpP 616802..617389 (+) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  DO80_RS03245 (DO80_06140) def 617394..617921 (+) 528 WP_108303633.1 peptide deformylase -
  DO80_RS03250 (DO80_06150) comM 617924..619444 (+) 1521 WP_108303632.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DO80_RS03255 (DO80_06160) - 619469..621529 (+) 2061 WP_108303631.1 heavy metal translocating P-type ATPase -
  DO80_RS03260 (DO80_06170) - 621567..622847 (+) 1281 WP_108303630.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57192.22 Da        Isoelectric Point: 8.2333

>NTDB_id=62568 DO80_RS03250 WP_108303632.1 617924..619444(+) (comM) [Helicobacter pylori strain TN2wt]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSITKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=62568 DO80_RS03250 WP_108303632.1 617924..619444(+) (comM) [Helicobacter pylori strain TN2wt]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGAGTGGCAGAGATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCTGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCCCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGTATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAC
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGGTTTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTATAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGTGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.008

100

0.364

Multiple sequence alignment