Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LNN29_RS02120 Genome accession   NZ_CP086604
Coordinates   448537..449166 (+) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain EF20JDJ4045     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 443537..454166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN29_RS02100 (LNN29_02095) - 443945..445704 (-) 1760 Protein_411 Lon protease family protein -
  LNN29_RS02105 (LNN29_02100) matP 445889..446344 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  LNN29_RS02110 (LNN29_02105) ompA 446399..447454 (-) 1056 WP_024256413.1 porin OmpA -
  LNN29_RS02115 (LNN29_02110) sulA 447811..448320 (-) 510 WP_000288735.1 SOS-induced cell division inhibitor SulA -
  LNN29_RS02120 (LNN29_02115) sxy/tfoX 448537..449166 (+) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  LNN29_RS02125 (LNN29_02120) yccS 449129..451282 (-) 2154 WP_032243386.1 YccS family putative transporter -
  LNN29_RS02130 (LNN29_02125) - 451302..451748 (-) 447 WP_002431615.1 YccF domain-containing protein -
  LNN29_RS02135 (LNN29_02130) helD 451871..453925 (+) 2055 WP_000420509.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=625674 LNN29_RS02120 WP_000793790.1 448537..449166(+) (sxy/tfoX) [Escherichia fergusonii strain EF20JDJ4045]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=625674 LNN29_RS02120 WP_000793790.1 448537..449166(+) (sxy/tfoX) [Escherichia fergusonii strain EF20JDJ4045]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699