Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VIBNI_RS00805 Genome accession   NC_022528
Coordinates   161759..162277 (+) Length   172 a.a.
NCBI ID   WP_022549569.1    Uniprot ID   U4K8G3
Organism   Vibrio nigripulchritudo     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 156759..167277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS00795 (VIBNI_A0158) gshA 159555..161123 (+) 1569 WP_022549568.1 glutamate--cysteine ligase -
  VIBNI_RS00800 (VIBNI_A0159) - 161129..161734 (+) 606 WP_004408878.1 hypothetical protein -
  VIBNI_RS00805 (VIBNI_A0160) luxS 161759..162277 (+) 519 WP_022549569.1 S-ribosylhomocysteine lyase Regulator
  VIBNI_RS00810 (VIBNI_A0161) - 162327..163556 (-) 1230 WP_022549570.1 YbiU family protein -
  VIBNI_RS00815 (VIBNI_A0162) - 163760..165022 (-) 1263 WP_004408884.1 CNNM domain-containing protein -
  VIBNI_RS00820 (VIBNI_A0163) - 165119..165913 (-) 795 WP_004408885.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18919.71 Da        Isoelectric Point: 4.5235

>NTDB_id=62561 VIBNI_RS00805 WP_022549569.1 161759..162277(+) (luxS) [Vibrio nigripulchritudo]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSETGIHTLEHLYAGFMRKHLNGADIEIIDISP
MGCRTGFYMSLIGTPVESQVAEAWLAAMQDVLKVENQDQIPELNEYQCGTAAMHSLDEAKEIATAIIEAGISVNKNEDLA
LPESMLKELSVK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=62561 VIBNI_RS00805 WP_022549569.1 161759..162277(+) (luxS) [Vibrio nigripulchritudo]
ATGCCATTACTAGATAGTTTTACCGTTGATCACACCAAGATGAATGCTCCAGCCGTTCGTGTGGCTAAAACCATGCAGAC
GCCAAAAGGGGACACGATTACCGTTTTTGATCTTCGTTTTACGGCACCTAACAAAGACATTCTGTCTGAGACGGGCATCC
ACACACTTGAACACCTGTACGCAGGTTTCATGCGTAAACACCTGAATGGCGCTGATATCGAAATCATCGATATTTCACCA
ATGGGTTGTCGTACTGGTTTCTACATGAGTCTTATCGGCACGCCTGTTGAATCTCAAGTGGCAGAGGCATGGCTTGCAGC
TATGCAAGATGTGTTAAAAGTTGAAAACCAGGATCAGATCCCCGAGCTGAACGAATACCAGTGTGGTACTGCTGCGATGC
ACTCTCTGGATGAAGCAAAAGAGATTGCAACAGCAATTATCGAAGCAGGAATTTCGGTAAACAAAAATGAAGATCTTGCG
CTACCAGAATCTATGCTGAAAGAGCTGAGCGTGAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4K8G3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment