Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LK342_RS12760 Genome accession   NZ_CP086574
Coordinates   2649957..2650622 (-) Length   221 a.a.
NCBI ID   WP_000697875.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2651268..2651627 2649957..2650622 flank 646


Gene organization within MGE regions


Location: 2649957..2651627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS12760 (LK342_12760) braR 2649957..2650622 (-) 666 WP_000697875.1 response regulator transcription factor Regulator
  LK342_RS12765 (LK342_12765) - 2650658..2650843 (-) 186 WP_000604733.1 hypothetical protein -
  LK342_RS12770 (LK342_12770) - 2651033..2651260 (-) 228 WP_072368946.1 hypothetical protein -
  LK342_RS12775 (LK342_12775) - 2651262..2651627 (+) 366 Protein_2480 transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25270.26 Da        Isoelectric Point: 4.7961

>NTDB_id=625604 LK342_RS12760 WP_000697875.1 2649957..2650622(-) (braR) [Staphylococcus argenteus strain RIVM_M046968]
MKILIVEDDFVIAESLASELKKWNYDVVVAEQFDNITAVFNNHQPQLVLLDINLPTLNGFHWCQEIRKTSNVPIMFISSR
IDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLTVVNDTLTVKGCTLILDEAKVAYQGESIQLSLTELQILK
LLFQSEDKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLSTIGLNDFITTKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=625604 LK342_RS12760 WP_000697875.1 2649957..2650622(-) (braR) [Staphylococcus argenteus strain RIVM_M046968]
ATGAAAATATTAATTGTTGAAGATGATTTTGTTATAGCGGAAAGTTTAGCATCTGAATTAAAAAAATGGAATTATGATGT
GGTTGTGGCAGAACAGTTTGATAATATAACAGCCGTTTTTAACAATCATCAACCACAGCTTGTGCTGTTAGATATCAATT
TACCTACTTTAAATGGTTTTCATTGGTGCCAAGAAATACGCAAAACATCAAATGTACCTATCATGTTTATTAGTTCGCGT
ATTGATAACATGGATCAAATTATGGCTATACAAATGGGTGGCGATGATTTTATTGAAAAACCATTCAATTTGTCATTAAC
TATTGCTAAAATTCAAGCGCTTTTAAGACGTACTTATGATCTAACAGTAGTCAATGATACGCTGACAGTCAAAGGGTGTA
CGCTAATATTAGATGAAGCTAAGGTTGCTTATCAAGGGGAGAGTATACAGCTGTCTTTGACGGAATTACAAATTTTAAAA
TTGTTGTTCCAAAGCGAAGACAAGTATGTGAGTCGAACAGCTTTAATTGAAAAATGCTGGGAGTCTGAAAACTTCATAGA
TGATAATACATTAGCAGTAAATATGACACGTCTACGTAAAAAATTAAGTACTATAGGCCTCAATGATTTTATCACTACCA
AGAAAAATGTTGGATATAAAGTATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

90.95

100

0.91