Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LK342_RS07270 Genome accession   NZ_CP086574
Coordinates   1568732..1569802 (-) Length   356 a.a.
NCBI ID   WP_047434565.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563732..1574802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS07230 (LK342_07230) gcvPA 1563909..1565255 (-) 1347 WP_047526704.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LK342_RS07235 (LK342_07235) gcvT 1565274..1566365 (-) 1092 WP_047526706.1 glycine cleavage system aminomethyltransferase GcvT -
  LK342_RS07240 (LK342_07240) - 1566522..1567046 (-) 525 WP_047526708.1 shikimate kinase -
  LK342_RS07245 (LK342_07245) - 1567033..1567182 (-) 150 WP_072292059.1 hypothetical protein -
  LK342_RS07250 (LK342_07250) comGF 1567281..1567736 (-) 456 WP_078377685.1 competence type IV pilus minor pilin ComGF Machinery gene
  LK342_RS07255 (LK342_07255) comGE 1567696..1567995 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  LK342_RS07260 (LK342_07260) comGD 1567982..1568428 (-) 447 WP_072292023.1 competence type IV pilus minor pilin ComGD Machinery gene
  LK342_RS07265 (LK342_07265) comGC 1568406..1568717 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  LK342_RS07270 (LK342_07270) comGB 1568732..1569802 (-) 1071 WP_047434565.1 competence type IV pilus assembly protein ComGB Machinery gene
  LK342_RS07275 (LK342_07275) comGA 1569774..1570748 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  LK342_RS07280 (LK342_07280) - 1570800..1571423 (-) 624 WP_001222932.1 MBL fold metallo-hydrolase -
  LK342_RS07285 (LK342_07285) - 1571420..1571749 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  LK342_RS07290 (LK342_07290) - 1571749..1572735 (-) 987 WP_000161316.1 ROK family glucokinase -
  LK342_RS07295 (LK342_07295) - 1572735..1572935 (-) 201 WP_000087563.1 YqgQ family protein -
  LK342_RS07300 (LK342_07300) - 1572916..1574379 (-) 1464 WP_250340807.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41717.11 Da        Isoelectric Point: 10.1752

>NTDB_id=625585 LK342_RS07270 WP_047434565.1 1568732..1569802(-) (comGB) [Staphylococcus argenteus strain RIVM_M046968]
MKVQWISIFKKYSKKRQLNKAQQIELIVNLKNLLQYGFTLYQSFQFLNLQIKYKDKELSSKILSEISNGASCSKILAMLG
YSDTIVMQIYLAERFGNIVDILDETVKFMKINRKSEQRLLKTLQYPLVLVSVFIGMIMMLNITVIPQFQQLYTSMNIKLS
TFQKALSFFISSLPSLILITIFLILILTTSIKLIYNRLTMLYKINFMMKIPILSSYYKLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGEYLLTYSEKGYGLPEILSNLKCFKPQLIKFIQQGEKRGKLEVELRLYSQILVKQIEDKAIR
QTQFIQPILFLILGLFIVAIYLVIMLPMFQMMQSIN

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=625585 LK342_RS07270 WP_047434565.1 1568732..1569802(-) (comGB) [Staphylococcus argenteus strain RIVM_M046968]
GTGAAAGTACAATGGATAAGTATATTTAAAAAATATTCTAAGAAACGACAATTAAACAAAGCACAACAAATTGAGCTAAT
TGTAAATTTAAAGAATTTACTACAATATGGGTTCACATTATATCAAAGCTTTCAGTTTCTAAACCTTCAAATTAAATATA
AAGATAAAGAACTATCGTCAAAAATTCTTAGCGAAATTTCGAATGGTGCATCGTGTAGCAAAATACTAGCCATGTTAGGC
TATAGTGATACTATAGTAATGCAAATTTACTTAGCAGAAAGGTTTGGTAATATTGTAGATATCTTAGATGAAACAGTGAA
ATTTATGAAAATAAATAGAAAATCCGAGCAAAGATTATTAAAAACTTTGCAATATCCCTTAGTGTTAGTTTCAGTATTTA
TAGGAATGATTATGATGTTGAATATCACTGTTATTCCACAATTCCAACAACTATATACTTCAATGAATATTAAATTATCA
ACATTTCAAAAAGCACTTTCCTTTTTTATCTCAAGTTTACCCTCATTAATTTTAATAACAATTTTTCTTATTTTAATTTT
AACCACCTCAATAAAATTAATTTATAACAGGCTAACGATGTTATATAAAATCAACTTTATGATGAAGATACCAATTTTAT
CCAGTTATTATAAGTTGTTCAAAACATATTTTGTTACAAATGAATTAGTTTTATTCTATAAAAATGGTATTACACTTCAA
TCTATCGTTGATGTTTATATCAATCATAGTAGTGATCCATTCAGACAATTTTTAGGTGAATATTTATTAACATATTCAGA
AAAAGGATATGGGTTACCGGAAATTTTATCAAATTTAAAGTGCTTTAAACCACAATTGATAAAGTTTATACAGCAAGGTG
AAAAAAGAGGAAAATTAGAAGTTGAGCTTAGATTATACTCTCAAATTTTAGTGAAACAAATTGAAGATAAAGCGATTCGT
CAAACTCAATTTATACAACCAATTTTATTTTTAATCTTAGGGCTTTTTATTGTTGCAATTTATCTAGTAATAATGCTACC
AATGTTCCAAATGATGCAAAGTATTAATTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(32-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

78.592

99.719

0.784
  comGB Staphylococcus aureus N315

78.592

99.719

0.784