Detailed information NTG0062558

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VIBNI_RS00665
• Genome accession: NC_022528
• Coordinates: 129578..130564 (+)
• Length: 328 a.a.
• NCBI ID: WP_022549549.1
• Uniprot ID: U4JU17
• Organism: Vibrio nigripulchritudo
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 124578..135564

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIBNI_RS00630 (VIBNI_A0130)	ftsB	124640..124924 (+)	285	WP_004401310.1	cell division protein FtsB	-
VIBNI_RS00635 (VIBNI_A0131)	ispD	124933..125646 (+)	714	WP_022549545.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VIBNI_RS00640 (VIBNI_A0132)	ispF	125656..126132 (+)	477	WP_004401308.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VIBNI_RS00645 (VIBNI_A0133)	truD	126136..127179 (+)	1044	WP_022549546.1	tRNA pseudouridine(13) synthase TruD	-
VIBNI_RS00650 (VIBNI_A0134)	surE	127207..127953 (+)	747	WP_022549547.1	5'/3'-nucleotidase SurE	-
VIBNI_RS00655 (VIBNI_A0135)	-	127954..128580 (+)	627	WP_022549548.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VIBNI_RS00660 (VIBNI_A0136)	nlpD	128596..129519 (+)	924	WP_038124047.1	murein hydrolase activator NlpD	-
VIBNI_RS00665 (VIBNI_A0137)	rpoS	129578..130564 (+)	987	WP_022549549.1	RNA polymerase sigma factor RpoS	Regulator
VIBNI_RS00670 (VIBNI_A0138)	-	130751..131272 (+)	522	WP_022549550.1	hypothetical protein	-
VIBNI_RS00675 (VIBNI_A0139)	mutS	131343..133874 (-)	2532	WP_038200108.1	DNA mismatch repair protein MutS	-
VIBNI_RS00680 (VIBNI_A0140)	-	134313..134930 (+)	618	WP_022549552.1	DUF1449 family protein	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37800.77 Da
• Isoelectric Point: 4.6196

>NTDB_id=62558 VIBNI_RS00665 WP_022549549.1 129578..130564(+) (rpoS) [Vibrio nigripulchritudo]
MSISNAVTKVEEEFDYEAVGMEQTTREESTLTQEKQSEQKEEFEVSAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDINNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=62558 VIBNI_RS00665 WP_022549549.1 129578..130564(+) (rpoS) [Vibrio nigripulchritudo]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGATTACGAAGCGGTAGGTATGGAACAAACCACCAGGGA
AGAATCTACTCTCACTCAAGAAAAACAGTCTGAACAGAAAGAAGAATTTGAGGTAAGTGCAAAAAGTTTAGACGCCACTC
AACTGTATCTCGGAGAGATCGGTTTCTCACCTCTTCTCACAGCAGAAGAAGAAGTCCTGTATGCACGTCGCGCACTTCGA
GGAGACGAAGCTGCACGCAAACGCATGATCGAAAGTAACCTTCGTTTAGTGGTTAAAATCTCTCGCCGTTACGGTAACAG
AGGGCTAGCACTGCTCGATCTTATCGAAGAAGGTAATCTAGGGCTGATCCGCGCCGTTGAGAAATTTGATCCGGAAAGAG
GTTTCCGTTTTTCAACGTACGCAACATGGTGGATTCGTCAAACCATCGAACGTGCATTGATGAACCAAACTCGAACGATT
CGTTTGCCCATACACGTAGTGAAAGAGCTAAATATCTATTTAAGAACGGCTCGGGAGCTATCGCAGAAACTGGATCATGA
ACCAACGGCAGAAGAAATTGCCCAGCAGCTAGATAAGCCTGTTGATGATGTCAGTAAAATGCTTCGTCTGAATGAAAGAG
TCAGCTCTGTAGACACACCAATTGGTGGTGAAAGCGAGAAAGCACTCTTAGACATCATTCCAGACATAAACAACTCTGAT
CCTGAAGTCTGTACTCAAGACGATGACATCAAACATTCTCTGATCGATTGGCTGGATGATTTGAATCCCAAGCAGAAAGA
AGTACTTGCCCGACGTTTTGGTCTTCTAGGATATGAACCTTCAACACTGGAAGAGGTAGGGCGCGAGATCAACTTAACTC
GTGAACGCGTACGTCAGATCCAAGTTGAAGGGCTTCGCCGTTTAAGAGAGATCTTAGTGAAGCAAGGTCTGAACATGGAA
TCGCTGTTTAATGTCGAAAACGACTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

3D structure

• AlphaFold DB: U4JU17

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.284	100	0.851