Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LK336_RS13325 Genome accession   NZ_CP086572
Coordinates   2772620..2773336 (-) Length   238 a.a.
NCBI ID   WP_000688486.1    Uniprot ID   A0A7U7PWL0
Organism   Staphylococcus argenteus strain RIVM_M036020     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2767620..2778336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK336_RS13310 (LK336_13300) - 2768728..2769678 (+) 951 WP_031787863.1 LacI family DNA-binding transcriptional regulator -
  LK336_RS13315 (LK336_13305) - 2769827..2771311 (+) 1485 WP_000141408.1 sucrose-6-phosphate hydrolase -
  LK336_RS13320 (LK336_13310) - 2771308..2772267 (+) 960 WP_031787862.1 carbohydrate kinase -
  LK336_RS13325 (LK336_13315) agrA 2772620..2773336 (-) 717 WP_000688486.1 LytTR family DNA-binding domain-containing protein Regulator
  LK336_RS13330 (LK336_13320) - 2773355..2774647 (-) 1293 WP_031787861.1 GHKL domain-containing protein -
  LK336_RS13335 (LK336_13325) - 2774672..2774812 (-) 141 WP_001093930.1 cyclic lactone autoinducer peptide -
  LK336_RS13340 (LK336_13330) - 2774814..2775377 (-) 564 WP_031787860.1 accessory gene regulator AgrB -
  LK336_RS13345 hld 2775667..2775747 (+) 81 WP_000046023.1 delta-hemolysin -
  LK336_RS13350 (LK336_13340) - 2776268..2777053 (-) 786 WP_031787859.1 carbon-nitrogen family hydrolase -
  LK336_RS13355 (LK336_13345) - 2777154..2777780 (-) 627 WP_031787858.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27894.87 Da        Isoelectric Point: 5.8625

>NTDB_id=625560 LK336_RS13325 WP_000688486.1 2772620..2773336(-) (agrA) [Staphylococcus argenteus strain RIVM_M036020]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDDPYEVLEQSKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=625560 LK336_RS13325 WP_000688486.1 2772620..2773336(-) (agrA) [Staphylococcus argenteus strain RIVM_M036020]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAACCTATGGAAATTGCCCTCGCAACTGATGATCCTTATGAGGTGCTTGAGCAATCTAAAAATATGAATGATATAG
GTTGTTACTTTTTAGATATTCAACTTTCAACAGACATTAATGGTATTAAATTAGGTAGTGAAATACGTAAGCATGACCCT
GTTGGCAATATAATATTTGTTACTAGTCATAGTGAACTTACTTATTTAACATTTGTCTACAAAGTTGCAGCAATGGATTT
TATTTTTAAAGATGATCCTGCTGAATTAAAAACACGAATTATAGATTGTCTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATAGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATACGATGATATTATG
TTTTTCGAATCATCTACCAAATCGCATAGACTCATCGCCCATTTAGATAATCGTCAAATTGAATTTTATGGTAATTTAAA
AGAATTGAGTCAATTAGATGATCGTTTTTTCAGATGTCATAATAGTTTTGTTGTCAATCGTCATAATATCGAATCCATTG
ATTCGAAAGAACGAATTGTCTATTTTAAAAATAAAGAACATTGTTATGCATCGGTAAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PWL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

98.739

100

0.987