Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NYS58_RS20625 Genome accession   NZ_CP103790
Coordinates   4344225..4344821 (-) Length   198 a.a.
NCBI ID   WP_003111077.1    Uniprot ID   Q02K17
Organism   Pseudomonas aeruginosa strain 8247     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4339225..4349821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS58_RS20600 - 4339572..4339739 (-) 168 Protein_4075 TetR family transcriptional regulator -
  NYS58_RS20605 - 4339861..4341444 (+) 1584 WP_003121915.1 flavin-containing monooxygenase -
  NYS58_RS20610 - 4341441..4342328 (+) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  NYS58_RS20615 - 4342402..4342941 (+) 540 WP_003111079.1 CbrC family protein -
  NYS58_RS20620 - 4342954..4344102 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  NYS58_RS20625 recR 4344225..4344821 (-) 597 WP_003111077.1 recombination mediator RecR Machinery gene
  NYS58_RS20630 - 4344900..4345226 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  NYS58_RS20635 dnaX 4345272..4347371 (-) 2100 WP_031656632.1 DNA polymerase III subunit gamma/tau -
  NYS58_RS20640 - 4347408..4348274 (+) 867 WP_003140216.1 substrate-binding periplasmic protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21201.48 Da        Isoelectric Point: 6.3332

>NTDB_id=625540 NYS58_RS20625 WP_003111077.1 4344225..4344821(-) (recR) [Pseudomonas aeruginosa strain 8247]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRRCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=625540 NYS58_RS20625 WP_003111077.1 4344225..4344821(-) (recR) [Pseudomonas aeruginosa strain 8247]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCGGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCTCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02K17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48