Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LK341_RS13215 | Genome accession | NZ_CP086570 |
| Coordinates | 2763366..2763836 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934772.1 | Uniprot ID | - |
| Organism | Staphylococcus argenteus strain RIVM_M020832 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2758366..2768836
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK341_RS13175 (LK341_13165) | - | 2758388..2758708 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| LK341_RS13180 (LK341_13170) | - | 2758705..2758866 (+) | 162 | WP_000066009.1 | DUF1270 domain-containing protein | - |
| LK341_RS13185 (LK341_13175) | - | 2758961..2759256 (+) | 296 | Protein_2556 | DUF2482 family protein | - |
| LK341_RS13190 (LK341_13180) | - | 2759261..2759521 (+) | 261 | WP_000291505.1 | DUF1108 family protein | - |
| LK341_RS13195 (LK341_13185) | - | 2759530..2759793 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| LK341_RS13200 (LK341_13190) | - | 2759790..2761745 (+) | 1956 | WP_048657537.1 | AAA family ATPase | - |
| LK341_RS13205 (LK341_13195) | - | 2761747..2762667 (+) | 921 | WP_000138479.1 | recombinase RecT | - |
| LK341_RS13210 (LK341_13200) | - | 2762748..2763365 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| LK341_RS13215 (LK341_13205) | ssbA | 2763366..2763836 (+) | 471 | WP_000934772.1 | single-stranded DNA-binding protein | Machinery gene |
| LK341_RS13220 (LK341_13210) | - | 2763866..2764759 (+) | 894 | WP_000148334.1 | DnaD domain-containing protein | - |
| LK341_RS13225 (LK341_13215) | - | 2764766..2764984 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| LK341_RS13230 (LK341_13220) | - | 2764993..2765397 (+) | 405 | WP_000401958.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LK341_RS13235 (LK341_13225) | - | 2765410..2765761 (+) | 352 | Protein_2566 | SA1788 family PVL leukocidin-associated protein | - |
| LK341_RS13240 (LK341_13230) | - | 2765762..2766010 (+) | 249 | WP_001126845.1 | phi PVL orf 51-like protein | - |
| LK341_RS13245 (LK341_13235) | - | 2766024..2766458 (+) | 435 | WP_001127465.1 | YopX family protein | - |
| LK341_RS13250 (LK341_13240) | - | 2766455..2766802 (+) | 348 | WP_001105606.1 | hypothetical protein | - |
| LK341_RS13255 (LK341_13245) | - | 2766961..2767371 (+) | 411 | WP_000197966.1 | hypothetical protein | - |
| LK341_RS13260 (LK341_13250) | - | 2767364..2767489 (+) | 126 | Protein_2571 | DUF1024 family protein | - |
| LK341_RS13265 (LK341_13255) | - | 2767845..2768387 (+) | 543 | WP_000181814.1 | dUTP pyrophosphatase | - |
| LK341_RS13270 (LK341_13260) | - | 2768424..2768612 (+) | 189 | WP_000195837.1 | DUF1381 domain-containing protein | - |
| LK341_RS13275 (LK341_13265) | - | 2768587..2768787 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17657.52 Da Isoelectric Point: 5.2672
>NTDB_id=625515 LK341_RS13215 WP_000934772.1 2763366..2763836(+) (ssbA) [Staphylococcus argenteus strain RIVM_M020832]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=625515 LK341_RS13215 WP_000934772.1 2763366..2763836(+) (ssbA) [Staphylococcus argenteus strain RIVM_M020832]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |