Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   NYS59_RS27200 Genome accession   NZ_CP103789
Coordinates   5856868..5857392 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2718     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5851868..5862392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS59_RS27185 aroB 5852984..5854090 (-) 1107 WP_009314395.1 3-dehydroquinate synthase -
  NYS59_RS27190 aroK 5854140..5854658 (-) 519 WP_003095833.1 shikimate kinase AroK -
  NYS59_RS27195 pilQ 5854670..5856814 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  NYS59_RS27200 comL/pilP 5856868..5857392 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  NYS59_RS27205 pilO 5857389..5858012 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  NYS59_RS27210 pilN 5858009..5858605 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  NYS59_RS27215 pilM 5858605..5859669 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  NYS59_RS27220 - 5859854..5862325 (+) 2472 WP_031693142.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=625469 NYS59_RS27200 WP_003095836.1 5856868..5857392(-) (comL/pilP) [Pseudomonas aeruginosa strain 2718]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=625469 NYS59_RS27200 WP_003095836.1 5856868..5857392(-) (comL/pilP) [Pseudomonas aeruginosa strain 2718]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362