Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NYS59_RS02520 Genome accession   NZ_CP103789
Coordinates   551836..552561 (-) Length   241 a.a.
NCBI ID   WP_031693667.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2718     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 546836..557561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS59_RS02495 - 547309..547824 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  NYS59_RS02500 rarD 548514..549410 (-) 897 WP_003103301.1 EamA family transporter RarD -
  NYS59_RS02505 - 549612..550586 (-) 975 WP_023095128.1 serine/threonine protein kinase -
  NYS59_RS02510 - 550648..551406 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  NYS59_RS02515 - 551474..551794 (-) 321 WP_003111112.1 YfiM family lipoprotein -
  NYS59_RS02520 comF 551836..552561 (-) 726 WP_031693667.1 ComF family protein Machinery gene
  NYS59_RS02525 - 552700..552993 (-) 294 WP_003084806.1 hypothetical protein -
  NYS59_RS02530 - 553047..553973 (-) 927 WP_023435400.1 LysR family transcriptional regulator -
  NYS59_RS02535 - 554091..554849 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  NYS59_RS02540 - 554926..555174 (+) 249 WP_003111233.1 acetyl-CoA carboxylase -
  NYS59_RS02545 - 555185..556561 (+) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  NYS59_RS02550 - 556563..557441 (+) 879 WP_016852390.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26948.47 Da        Isoelectric Point: 10.8088

>NTDB_id=625401 NYS59_RS02520 WP_031693667.1 551836..552561(-) (comF) [Pseudomonas aeruginosa strain 2718]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYTEGLPPPARLLPVPLAPRRERRRGFNQAQQLAERLAGELGLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=625401 NYS59_RS02520 WP_031693667.1 551836..552561(-) (comF) [Pseudomonas aeruginosa strain 2718]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCATGGTCGCGCCAGCAGTGTCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACACCGAAGGCCTGCCGCCCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGGCCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.5

99.585

0.373
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361