Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NYR91_RS18375 Genome accession   NZ_CP103784
Coordinates   3573787..3574920 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3568787..3579920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS18335 (NYR91_18335) ywnA 3568915..3569316 (-) 402 WP_014478233.1 Rrf2 family transcriptional regulator -
  NYR91_RS18340 (NYR91_18340) ureC 3569451..3571160 (-) 1710 WP_014478234.1 urease subunit alpha -
  NYR91_RS18345 (NYR91_18345) ureB 3571157..3571531 (-) 375 WP_014478235.1 urease subunit beta -
  NYR91_RS18350 (NYR91_18350) ureA 3571528..3571845 (-) 318 WP_014478236.1 urease subunit gamma -
  NYR91_RS18355 (NYR91_18355) - 3572040..3572200 (-) 161 Protein_3565 hypothetical protein -
  NYR91_RS18360 (NYR91_18360) - 3572412..3572675 (-) 264 WP_014478239.1 ABC transporter -
  NYR91_RS18365 (NYR91_18365) csbD 3572893..3573081 (-) 189 WP_003227718.1 stress response protein CsbD -
  NYR91_RS18370 (NYR91_18370) - 3573154..3573633 (-) 480 WP_014478240.1 hypothetical protein -
  NYR91_RS18375 (NYR91_18375) rapC 3573787..3574920 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  NYR91_RS18380 (NYR91_18380) moaA 3575112..3576137 (-) 1026 WP_014478243.1 GTP 3',8-cyclase MoaA -
  NYR91_RS18385 (NYR91_18385) fdhD 3576153..3576941 (-) 789 WP_014478244.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  NYR91_RS18390 (NYR91_18390) - 3577174..3577335 (-) 162 WP_014478245.1 hypothetical protein -
  NYR91_RS18395 (NYR91_18395) ywmD 3577430..3578104 (-) 675 WP_003243553.1 VWA domain-containing protein -
  NYR91_RS18400 (NYR91_18400) - 3578157..3578297 (-) 141 WP_014478246.1 hypothetical protein -
  NYR91_RS18405 (NYR91_18405) ywmC 3578428..3579111 (-) 684 WP_014478248.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=625378 NYR91_RS18375 WP_014478242.1 3573787..3574920(-) (rapC) [Bacillus subtilis strain RO-NN-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=625378 NYR91_RS18375 WP_014478242.1 3573787..3574920(-) (rapC) [Bacillus subtilis strain RO-NN-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTCGATTATGTAAAGCCCGACCTGCACGAGGAATCTCAGCTTCAATAT
CGGGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTTGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTTTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTATATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424